Oprl1 (opioid related nociceptin receptor 1) - Rat Genome Database

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Gene: Oprl1 (opioid related nociceptin receptor 1) Chinchilla lanigera
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Symbol: Oprl1
Name: opioid related nociceptin receptor 1
RGD ID: 8757723
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); nociceptin receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); conditioned place preference (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); Anorexia (ortholog); autism spectrum disorder (ortholog); FOUND IN plasma membrane (ortholog); synaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nociceptin receptor; opiate receptor-like 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528161,673 - 167,937 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528161,673 - 184,515 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Oprl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528161,673 - 167,937 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955528161,673 - 184,515 (-)NCBIChiLan1.0ChiLan1.0
OPRL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382064,080,082 - 64,100,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2064,080,082 - 64,100,643 (+)EnsemblGRCh38hg38GRCh38
GRCh372062,711,435 - 62,731,996 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362062,181,932 - 62,202,440 (+)NCBINCBI36Build 36hg18NCBI36
Build 342062,181,931 - 62,202,440NCBI
Celera2059,397,677 - 59,420,493 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,457,992 - 59,460,858 (+)NCBIHuRef
CHM1_12062,612,487 - 62,633,363 (+)NCBICHM1_1
T2T-CHM13v2.02065,900,137 - 65,922,785 (+)NCBIT2T-CHM13v2.0
Oprl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,356,585 - 181,362,778 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,356,809 - 181,362,778 (+)EnsemblGRCm39 Ensembl
GRCm382181,715,000 - 181,720,985 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,715,016 - 181,720,985 (+)EnsemblGRCm38mm10GRCm38
MGSCv372181,449,749 - 181,455,677 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,644,450 - 181,650,378 (+)NCBIMGSCv36mm8
Celera2185,797,636 - 185,803,570 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.74NCBI
Oprl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83189,209,495 - 189,225,406 (+)NCBIGRCr8
mRatBN7.23168,831,934 - 168,839,920 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,834,003 - 168,839,920 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3173,213,623 - 173,219,540 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03182,172,714 - 182,178,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,834,940 - 178,840,857 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03177,223,779 - 177,231,663 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,225,737 - 177,231,663 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,932,344 - 180,943,574 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,869,862 - 170,873,417 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13170,775,328 - 170,780,949 (+)NCBI
Celera3163,747,719 - 163,753,636 (-)NCBICelera
Cytogenetic Map3q43NCBI
OPRL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,902,762 - 69,922,334 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,894,773 - 69,914,345 (+)NCBINHGRI_mPanPan1
PanPan1.12062,004,176 - 62,017,866 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2062,004,176 - 62,017,866 (+)Ensemblpanpan1.1panPan2
OPRL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,530,039 - 47,537,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,508,136 - 47,537,250 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,652,476 - 46,671,129 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,657,531 - 48,675,053 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12447,502,159 - 47,521,409 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,626,586 - 47,644,098 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,365,597 - 48,383,399 (+)NCBIUU_Cfam_GSD_1.0
Oprl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,806,255 - 195,819,941 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,258,335 - 11,273,592 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651411,264,392 - 11,273,584 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OPRL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,905,082 - 62,913,754 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,905,700 - 62,913,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Oprl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,714,477 - 29,720,716 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,713,937 - 29,720,617 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000004273   ⟹   ENSCLAP00000004191
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955528161,673 - 167,937 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000004274   ⟹   ENSCLAP00000004192
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955528163,947 - 167,274 (-)Ensembl
RefSeq Acc Id: XM_005409906   ⟹   XP_005409963
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528161,673 - 167,941 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005409907   ⟹   XP_005409964
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528161,673 - 167,937 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005409908   ⟹   XP_005409965
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528161,673 - 184,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507514   ⟹   XP_013362968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528161,673 - 180,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507515   ⟹   XP_013362969
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528161,673 - 168,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507516   ⟹   XP_013362970
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528161,673 - 168,130 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507517   ⟹   XP_013362971
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528161,673 - 180,033 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005409965   ⟸   XM_005409908
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005409963   ⟸   XM_005409906
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UTT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005409964   ⟸   XM_005409907
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UTT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362968   ⟸   XM_013507514
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362971   ⟸   XM_013507517
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013362969   ⟸   XM_013507515
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013362970   ⟸   XM_013507516
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000004191   ⟸   ENSCLAT00000004273
RefSeq Acc Id: ENSCLAP00000004192   ⟸   ENSCLAT00000004274

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002992 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004273 ENTREZGENE
  ENSCLAT00000004273.1 UniProtKB/TrEMBL
  ENSCLAT00000004274.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Opioid_rcpt UniProtKB/TrEMBL
  X_opioid_rcpt UniProtKB/TrEMBL
NCBI Gene Oprl1 ENTREZGENE
PANTHER NEUROPEPTIDES RECEPTOR UniProtKB/TrEMBL
  NOCICEPTIN RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OPIOIDR UniProtKB/TrEMBL
  XOPIOIDR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C2UTT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UW56_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Oprl1  opioid related nociceptin receptor 1    opiate receptor-like 1  Symbol and/or name change 5135510 APPROVED