Inip (INTS3 and NABP interacting protein)

Gene: Inip (INTS3 and NABP interacting protein) Chinchilla lanigera

Analyze

Symbol:

Inip

Name:

INTS3 and NABP interacting protein

RGD ID:

8754673

Description:

INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); site of double-strand break (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SOSS complex subunit C

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	14,728,816 - 14,732,971 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	14,729,275 - 14,732,971 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (ISO)

DNA repair (ISO)

double-strand break repair via homologous recombination (ISO)

mitotic G2/M transition checkpoint (ISO)

response to ionizing radiation (ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (ISO)

site of double-strand break (ISO)

SOSS complex (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Inip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	14,728,816 - 14,732,971 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	14,729,275 - 14,732,971 (+)	NCBI	ChiLan1.0	ChiLan1.0

INIP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	112,683,926 - 112,718,117 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	112,683,926 - 112,718,149 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	115,446,206 - 115,480,397 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	114,488,607 - 114,520,208 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	112,528,347 - 112,559,942	NCBI
Celera	9	85,947,827 - 85,979,428 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI
HuRef	9	85,046,466 - 85,078,054 (-)	NCBI		HuRef
CHM1_1	9	115,596,254 - 115,627,839 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	124,855,150 - 124,889,339 (-)	NCBI		T2T-CHM13v2.0

Inip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	59,769,637 - 59,783,855 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	59,769,637 - 59,801,589 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	59,769,637 - 59,783,885 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	59,769,637 - 59,801,589 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	59,782,514 - 59,796,727 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	59,863,696 - 59,877,909 (-)	NCBI		MGSCv36	mm8
Celera	4	59,686,347 - 59,700,559 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	32.81	NCBI

Inip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	79,443,317 - 79,457,552 (-)	NCBI		GRCr8
mRatBN7.2	5	74,648,392 - 74,662,628 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	74,648,392 - 74,662,628 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	76,553,185 - 76,567,413 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	78,374,821 - 78,389,050 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	78,347,006 - 78,361,235 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	77,016,871 - 77,031,106 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	77,019,431 - 77,031,120 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	81,150,193 - 81,164,419 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	77,890,067 - 77,901,083 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	77,895,179 - 77,907,736 (-)	NCBI
Celera	5	73,463,285 - 73,477,520 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

INIP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	26,717,250 - 26,751,388 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	26,719,498 - 26,753,758 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	83,811,378 - 83,845,638 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	111,965,338 - 111,999,561 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	111,965,947 - 111,999,561 (-)	Ensembl	panpan1.1		panPan2

INIP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	67,137,101 - 67,154,443 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	67,137,710 - 67,154,486 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	65,545,880 - 65,563,253 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	68,265,186 - 68,282,588 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	68,262,377 - 68,282,650 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	66,781,240 - 66,798,543 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	66,804,929 - 66,822,288 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	67,549,321 - 67,566,703 (-)	NCBI		UU_Cfam_GSD_1.0

Inip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	182,435,787 - 182,452,645 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	813,940 - 830,763 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	813,912 - 830,768 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

INIP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	253,375,199 - 253,393,852 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	253,375,193 - 253,393,886 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	284,184,381 - 284,203,314 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

INIP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	26,804,425 - 26,843,898 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	26,805,787 - 26,843,243 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	15,951,423 - 15,987,250 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Inip
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	22,290,519 - 22,322,889 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	22,290,567 - 22,320,752 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005382701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01020042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01020043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01099369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01099370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000014341 ⟹ ENSCLAP00000014183

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955419	14,728,816 - 14,732,349 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000014342 ⟹ ENSCLAP00000014184

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955419	14,729,241 - 14,732,971 (+)	Ensembl

RefSeq Acc Id:

XM_005382701 ⟹ XP_005382758

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955419	14,729,275 - 14,732,971 (+)	NCBI

Sequence:

show sequence

TTACGTCTTCTTTGTTCTCTTAAATTTTTTTTTTTAAAAAAAAATTTTAAAAAAAAAATTAAAA
AATAAAATGTAAATCTTTTGGGGCGCGGGCACGGGCTCCACGAGGAAGGCGGGACTTCCGCTCT
CCCCGGCGTACGTCAGTCCGGAGCCGGAAGCGCGGCGGGGCGGGAAGGTCGGAGCGCCGCGGGA
GCGCTGCTTTCACCTGTGTGGTCACGCCGCCGCCTCCACGGTCGACCCCCACAGTGAGAACCCA
GGGCGCCCTCGTGACCTAGGTAATGGTAAAGGGCTGATCATTTGCTACTGAGCACAGTTGGAAC
AAAACAAGATGGCAGCAAACTCTTCAGGACAAGGTTTTCAAAACAAAAATAGAGTTGCAATCTT
AGCAGAGCTGGACAAAGAAAAAAGAAAATTACTTATGCAGAACCAATCTTCAACCAATCATCCA
GGAGCTAGCATTGCGCTCTCCAGGCCCTCTCTTAATAAGGACTTCCGGGATCACGCCGAGCAGC
AGCATATTGCAGCCCAGCAGAAGGCAGCTTTGCAGCATGCTCACGCACATTCGTCTGGATACTT
CATAACTCAAGACTCCGCATTTGGGAATCTTATTCTTCCCGTTTTACCGCGCCTTGACCCAGAA
TGAAGAAAACATCTGCGATGAAAGGGACTGTGCAGCTTCAAAGACTGAAGCTACTCTCATTCAC
TGTTGTAAAAACTGACTTTCAGAATTTTGGCGAACTGACACGTGTTTTGCTTCTTTAAGAGAAA
GGAGTATGTAAGTGAAAGCAAAAAAAAGGGGAACCAGGATGATGGGAGCTTGGGAGCTGTATCG
TTTGAGGAGTTGACTATGCTCCCCATGACTATAACTTTTTTGTGACACCATTTGTTTTTTAGCT
CTAAATTGGATAGTCATGTAAAGTGAGGCTGCACCCCAACAAGTTGGGCTGAGTCTACAGTTGG
CTTTCAAGAAGCATTTATAGTACTTACTACTGAGGATTTAAAAAATGTGTTAATAGCTTAAATA
GGAAATTCATATTTACAGTTTGTAAGATTGATGTGGTATGATCTTTTGAATTTAGGGTCAGCAT
ATCATGCAGAAATATTCTTTGTGAACCCCTAACTAGTTCCCCCCTTACCCATTTTAAAAGGAAG
CTCAAGATAAGACTAAGTTACTAACCAGTCTTAATTTCTTTTATAAACAAATGCCATTATAAAG
GATATAACTAAATGCTATTAAAAACAAGAAATGTGCGTTTTCAGGTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005382758	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014183.1
	ENSCLAP00000014184
	ENSCLAP00000014184.1

RefSeq Acc Id:	XP_005382758 ⟸ XM_005382701
- UniProtKB:	A0A8C2VE12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAANSSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTNHPGASIALSRPSLNKDFRDHAEQQHI AAQQKAALQHAHAHSSGYFITQDSAFGNLILPVLPRLDPE hide sequence

RefSeq Acc Id:

ENSCLAP00000014183 ⟸ ENSCLAT00000014341

RefSeq Acc Id:

ENSCLAP00000014184 ⟸ ENSCLAT00000014342

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009792	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000014341.1	UniProtKB/TrEMBL
	ENSCLAT00000014342	ENTREZGENE
	ENSCLAT00000014342.1	UniProtKB/TrEMBL
InterPro	SOSSC	UniProtKB/TrEMBL
NCBI Gene	Inip	ENTREZGENE
PANTHER	PTHR31526	UniProtKB/TrEMBL
	SOSS COMPLEX SUBUNIT C	UniProtKB/TrEMBL
Pfam	SOSSC	UniProtKB/TrEMBL
UniProt	A0A8C2VDZ6_CHILA	UniProtKB/TrEMBL
	A0A8C2VE12	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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