Degs1 (delta 4-desaturase, sphingolipid 1) - Rat Genome Database
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Gene: Degs1 (delta 4-desaturase, sphingolipid 1) Chinchilla lanigera
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Symbol: Degs1
Name: delta 4-desaturase, sphingolipid 1
RGD ID: 8753427
Description: ENCODES a protein that exhibits retinol isomerase activity (ortholog); sphingolipid delta-4 desaturase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); myelin maintenance (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hypomyelinating Leukodystrophy 18 (ortholog); leukodystrophy (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: delta(4)-desaturase, sphingolipid 1; sphingolipid delta(4)-desaturase DES1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,135,563 - 1,143,192 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555201,139,568 - 1,143,149 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Degs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,135,563 - 1,143,192 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555201,139,568 - 1,143,149 (-)NCBIChiLan1.0ChiLan1.0
DEGS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1224,175,756 - 224,193,441 (+)EnsemblGRCh38hg38GRCh38
GRCh381224,183,240 - 224,193,441 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371224,370,942 - 224,381,143 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361222,437,551 - 222,447,766 (+)NCBINCBI36hg18NCBI36
Celera1197,561,861 - 197,572,073 (+)NCBI
Cytogenetic Map1q42.11NCBI
HuRef1194,891,445 - 194,901,670 (+)NCBIHuRef
CHM1_11225,643,571 - 225,653,792 (+)NCBICHM1_1
Degs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391182,103,529 - 182,110,366 (-)NCBIGRCm39mm39
GRCm39 Ensembl1182,103,337 - 182,110,369 (-)Ensembl
GRCm381182,275,964 - 182,282,854 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,275,772 - 182,282,804 (-)EnsemblGRCm38mm10GRCm38
MGSCv371184,205,901 - 184,212,890 (-)NCBIGRCm37mm9NCBIm37
MGSCv361184,112,445 - 184,119,434 (-)NCBImm8
Celera1189,318,025 - 189,324,947 (-)NCBICelera
Cytogenetic Map1H5NCBI
Degs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21393,946,154 - 93,953,677 (-)NCBI
Rnor_6.0 Ensembl13100,666,075 - 100,672,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.013100,665,265 - 100,672,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013105,599,106 - 105,606,572 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41398,242,981 - 98,249,638 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11398,431,962 - 98,438,556 (-)NCBI
Celera1393,480,467 - 93,487,120 (-)NCBICelera
Cytogenetic Map13q26NCBI
DEGS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11204,659,389 - 204,683,171 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1204,659,389 - 204,668,901 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01199,651,712 - 199,661,848 (+)NCBIMhudiblu_PPA_v0panPan3
DEGS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl740,147,505 - 40,153,085 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1740,147,293 - 40,152,190 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Degs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365261,149,984 - 1,153,632 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEGS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,557,766 - 12,569,008 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11012,529,021 - 12,568,447 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21014,976,597 - 15,053,245 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DEGS1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,589,530 - 5,603,261 (-)NCBI
ChlSab1.1 Ensembl255,589,383 - 5,603,227 (-)Ensembl
Degs1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248355,880,855 - 5,889,295 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003091   ⟹   ENSCLAP00000003028
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555201,135,563 - 1,143,192 (-)Ensembl
RefSeq Acc Id: XM_005409229   ⟹   XP_005409286
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555201,139,568 - 1,143,149 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409286 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005409286   ⟸   XM_005409229
- Sequence:
RefSeq Acc Id: ENSCLAP00000003028   ⟸   ENSCLAT00000003091


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002172 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003028 ENTREZGENE
Ensembl Transcript ENSCLAT00000003091 ENTREZGENE
NCBI Gene Degs1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Degs1  delta 4-desaturase, sphingolipid 1    delta(4)-desaturase, sphingolipid 1  Symbol and/or name change 5135510 APPROVED