Kremen1 (kringle containing transmembrane protein 1) - Rat Genome Database

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Gene: Kremen1 (kringle containing transmembrane protein 1) Chinchilla lanigera
Analyze
Symbol: Kremen1
Name: kringle containing transmembrane protein 1
RGD ID: 8751981
Description: INVOLVED IN apoptotic process (ortholog); limb development (ortholog); negative regulation of axon regeneration (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Cancer, Familial (ortholog); ectodermal dysplasia 13 (ortholog); genetic disease (ortholog); FOUND IN neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kremen protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,320,346 - 3,368,690 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554553,308,740 - 3,368,690 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kremen1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,320,346 - 3,368,690 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554553,308,740 - 3,368,690 (+)NCBIChiLan1.0ChiLan1.0
KREMEN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,073,035 - 29,168,333 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,073,035 - 29,168,333 (+)EnsemblGRCh38hg38GRCh38
GRCh372229,469,023 - 29,564,321 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,799,106 - 27,872,808 (+)NCBINCBI36Build 36hg18NCBI36
Build 342227,793,659 - 27,863,040NCBI
Celera2213,268,961 - 13,364,205 (+)NCBICelera
Cytogenetic Map22q12.1NCBI
HuRef2212,431,878 - 12,528,398 (+)NCBIHuRef
CHM1_12229,428,225 - 29,523,454 (+)NCBICHM1_1
T2T-CHM13v2.02229,534,263 - 29,631,831 (+)NCBIT2T-CHM13v2.0
Kremen1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,141,551 - 5,212,220 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,141,552 - 5,211,558 (-)EnsemblGRCm39 Ensembl
GRCm38115,191,551 - 5,261,713 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,191,552 - 5,261,558 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,091,555 - 5,161,613 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,091,555 - 5,161,613 (-)NCBIMGSCv36mm8
Celera115,691,158 - 5,761,052 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.36NCBI
Kremen1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,295,931 - 84,361,534 (-)NCBIGRCr8
mRatBN7.21480,081,870 - 80,147,489 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,084,403 - 80,147,516 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,486,512 - 84,548,999 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,726,601 - 85,789,092 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,175,948 - 82,238,427 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,441,209 - 85,503,661 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,438,707 - 85,484,275 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,114,543 - 86,175,894 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,845,443 - 85,909,575 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11485,864,587 - 85,928,720 (-)NCBI
Celera1478,972,429 - 79,034,890 (-)NCBICelera
Cytogenetic Map14q21NCBI
KREMEN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,057,120 - 39,131,287 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12241,756,654 - 41,835,774 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,128,326 - 10,202,548 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12227,828,014 - 28,007,213 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2227,828,011 - 28,031,917 (+)Ensemblpanpan1.1panPan2
KREMEN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,408,397 - 22,481,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,407,506 - 22,480,384 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,280,486 - 22,353,730 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02622,783,070 - 22,856,290 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2622,782,815 - 22,851,716 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,492,122 - 22,565,437 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02622,756,210 - 22,829,458 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02622,819,719 - 22,893,111 (+)NCBIUU_Cfam_GSD_1.0
Kremen1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,667,995 - 112,715,143 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,155,958 - 3,202,658 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,155,564 - 3,206,385 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KREMEN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,254,326 - 46,323,354 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,254,248 - 46,323,355 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,218,268 - 49,287,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KREMEN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11911,943,787 - 12,056,706 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1911,943,835 - 12,014,759 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045114,122,710 - 114,206,650 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kremen1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247475,377,996 - 5,445,504 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247475,377,996 - 5,449,203 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000015633   ⟹   ENSCLAP00000015471
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554553,320,346 - 3,368,690 (+)Ensembl
RefSeq Acc Id: XM_005396174   ⟹   XP_005396231
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554553,308,740 - 3,368,690 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005396175   ⟹   XP_005396232
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554553,308,740 - 3,368,690 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005396231 (Get FASTA)   NCBI Sequence Viewer  
  XP_005396232 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015471
  ENSCLAP00000015471.1
RefSeq Acc Id: XP_005396231   ⟸   XM_005396174
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VH98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005396232   ⟸   XM_005396175
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VH98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015471   ⟸   ENSCLAT00000015633
Protein Domains
CUB   Kringle   WSC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010641 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015633 ENTREZGENE
  ENSCLAT00000015633.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.20.10 UniProtKB/TrEMBL
  2.60.120.290 UniProtKB/TrEMBL
InterPro CUB_dom UniProtKB/TrEMBL
  Kremen UniProtKB/TrEMBL
  Kringle UniProtKB/TrEMBL
  Kringle-like UniProtKB/TrEMBL
  Kringle_CS UniProtKB/TrEMBL
  Kringle_sf UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
  WSC_carb-bd UniProtKB/TrEMBL
NCBI Gene Kremen1 ENTREZGENE
PANTHER KREMEN PROTEIN UniProtKB/TrEMBL
  KREMEN PROTEIN 1 UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Kringle UniProtKB/TrEMBL
  WSC UniProtKB/TrEMBL
PIRSF Kremen UniProtKB/TrEMBL
PRINTS KRINGLE UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  KRINGLE_1 UniProtKB/TrEMBL
  KRINGLE_2 UniProtKB/TrEMBL
  WSC UniProtKB/TrEMBL
SMART CUB UniProtKB/TrEMBL
  SM00130 UniProtKB/TrEMBL
  WSC UniProtKB/TrEMBL
Superfamily-SCOP SSF49854 UniProtKB/TrEMBL
  SSF57440 UniProtKB/TrEMBL
UniProt A0A8C2VH98 ENTREZGENE, UniProtKB/TrEMBL