Rbm41 (RNA binding motif protein 41) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rbm41 (RNA binding motif protein 41) Chinchilla lanigera
Analyze
Symbol: Rbm41
Name: RNA binding motif protein 41
RGD ID: 8751269
Description: ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease type X (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 41
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554908,911,780 - 8,974,748 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554908,912,616 - 8,974,748 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rbm41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554908,911,780 - 8,974,748 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554908,912,616 - 8,974,748 (+)NCBIChiLan1.0ChiLan1.0
RBM41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X107,052,102 - 107,118,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX107,061,885 - 107,118,823 (-)EnsemblGRCh38hg38GRCh38
GRCh37X106,295,332 - 106,362,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X106,197,024 - 106,248,690 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX106,776,426 - 106,833,365 (-)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX95,932,996 - 95,989,584 (-)NCBIHuRef
CHM1_1X106,215,976 - 106,272,931 (-)NCBICHM1_1
T2T-CHM13v2.0X105,488,619 - 105,560,772 (-)NCBIT2T-CHM13v2.0
Rbm41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X138,790,260 - 138,899,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX138,790,260 - 138,899,344 (-)EnsemblGRCm39 Ensembl
GRCm38X139,889,511 - 139,998,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX139,889,511 - 139,998,595 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X136,424,050 - 136,533,134 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X135,290,605 - 135,344,915 (-)NCBIMGSCv36mm8
CeleraX123,152,817 - 123,260,713 (-)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX61.35NCBI
Rbm41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X108,394,323 - 108,448,969 (-)NCBIGRCr8
mRatBN7.2X103,605,732 - 103,660,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX103,608,585 - 103,660,381 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX105,741,077 - 105,792,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X109,239,805 - 109,291,617 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X106,803,396 - 106,855,166 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X111,272,347 - 111,325,203 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX111,269,490 - 111,325,186 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0353,307,343 - 53,322,777 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0353,272,291 - 53,277,434 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X127,687,341 - 127,744,248 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera344,267,369 - 44,319,103 (+)NCBICelera
Cytogenetic MapXq32NCBI
RBM41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X106,546,445 - 106,602,899 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X106,550,046 - 106,605,706 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X96,163,094 - 96,218,210 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X106,538,444 - 106,595,768 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX106,544,087 - 106,595,768 (-)Ensemblpanpan1.1panPan2
RBM41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X80,648,486 - 80,704,403 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX80,651,475 - 80,704,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX66,767,595 - 66,823,513 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X82,291,986 - 82,347,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX82,293,968 - 82,347,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X79,754,923 - 79,810,838 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X81,466,456 - 81,522,373 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X81,258,208 - 81,314,177 (-)NCBIUU_Cfam_GSD_1.0
Rbm41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X79,997,516 - 80,072,611 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364997,585,324 - 7,655,384 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364997,585,352 - 7,655,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX87,512,550 - 87,575,086 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X87,512,887 - 87,575,118 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X101,885,196 - 101,947,383 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X94,884,887 - 94,941,465 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX94,885,155 - 94,940,996 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606519,965,423 - 20,030,876 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248039,498,093 - 9,571,288 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248039,498,072 - 9,573,145 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000003313   ⟹   ENSCLAP00000003248
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554908,911,780 - 8,974,748 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003314   ⟹   ENSCLAP00000003249
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554908,911,780 - 8,974,748 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003315   ⟹   ENSCLAP00000003250
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554908,915,000 - 8,974,371 (+)Ensembl
RefSeq Acc Id: XM_005404705   ⟹   XP_005404762
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554908,912,616 - 8,974,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404706   ⟹   XP_005404763
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554908,912,616 - 8,974,748 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404762 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404763 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003248
  ENSCLAP00000003248.1
  ENSCLAP00000003249
  ENSCLAP00000003249.1
  ENSCLAP00000003250.1
RefSeq Acc Id: XP_005404762   ⟸   XM_005404705
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UMX0 (UniProtKB/TrEMBL),   A0A8C2YJH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404763   ⟸   XM_005404706
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UPJ5 (UniProtKB/TrEMBL),   A0A8C2YJH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003250   ⟸   ENSCLAT00000003315
RefSeq Acc Id: ENSCLAP00000003248   ⟸   ENSCLAT00000003313
RefSeq Acc Id: ENSCLAP00000003249   ⟸   ENSCLAT00000003314
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002330 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003313 ENTREZGENE
  ENSCLAT00000003313.1 UniProtKB/TrEMBL
  ENSCLAT00000003314 ENTREZGENE
  ENSCLAT00000003314.1 UniProtKB/TrEMBL
  ENSCLAT00000003315.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  6.10.250.610 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM41/RNPC3 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Rbm41 ENTREZGENE
PANTHER PTHR16105 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 41 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2UMX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UPJ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YJH4 ENTREZGENE, UniProtKB/TrEMBL