Ranbp9 (RAN binding protein 9) - Rat Genome Database

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Gene: Ranbp9 (RAN binding protein 9) Chinchilla lanigera
Analyze
Symbol: Ranbp9
Name: RAN binding protein 9
RGD ID: 8751044
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); positive regulation of amyloid precursor protein catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ran-binding protein 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,042,649 - 1,122,824 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,042,649 - 1,122,824 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ranbp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,042,649 - 1,122,824 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,042,649 - 1,122,824 (+)NCBIChiLan1.0ChiLan1.0
RANBP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38613,621,498 - 13,711,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl613,621,498 - 13,711,835 (-)EnsemblGRCh38hg38GRCh38
GRCh37613,621,730 - 13,712,067 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36613,729,709 - 13,819,775 (-)NCBINCBI36Build 36hg18NCBI36
Build 34613,729,709 - 13,819,775NCBI
Celera614,861,225 - 14,951,269 (-)NCBICelera
Cytogenetic Map6p23NCBI
HuRef613,566,106 - 13,655,863 (-)NCBIHuRef
CHM1_1613,624,097 - 13,714,170 (-)NCBICHM1_1
T2T-CHM13v2.0613,495,055 - 13,585,361 (-)NCBIT2T-CHM13v2.0
Ranbp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391343,556,151 - 43,634,949 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1343,556,151 - 43,634,758 (-)EnsemblGRCm39 Ensembl
GRCm381343,402,673 - 43,481,283 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1343,402,675 - 43,481,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv371343,498,042 - 43,576,342 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361343,414,351 - 43,491,945 (-)NCBIMGSCv36mm8
Celera1344,481,261 - 44,559,162 (-)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.6NCBI
Ranbp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,426,717 - 21,508,964 (+)NCBIGRCr8
mRatBN7.21721,220,807 - 21,303,009 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,220,618 - 21,303,004 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01724,020,874 - 24,103,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1724,021,736 - 24,103,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01725,970,454 - 26,053,706 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41727,035,105 - 27,128,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1720,919,207 - 21,000,420 (+)NCBICelera
Cytogenetic Map17p14NCBI
RANBP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2528,275,075 - 28,365,344 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1624,265,121 - 24,355,354 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0613,466,063 - 13,556,303 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1613,837,308 - 13,926,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl613,837,308 - 13,926,693 (-)Ensemblpanpan1.1panPan2
RANBP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13513,063,689 - 13,157,228 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3513,064,286 - 13,157,202 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3513,013,028 - 13,106,204 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03513,162,205 - 13,255,421 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3513,162,330 - 13,255,824 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,987,624 - 13,080,738 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03513,039,167 - 13,132,244 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03514,364,136 - 14,457,283 (-)NCBIUU_Cfam_GSD_1.0
Ranbp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,408,203 - 11,509,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936552222,320 - 291,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936552221,458 - 305,625 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,976,096 - 10,057,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.179,976,094 - 10,057,757 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2710,287,656 - 10,323,748 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,432,515 - 58,527,870 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604413,670,276 - 13,765,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,589,125 - 12,671,462 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475612,589,115 - 12,672,323 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004871   ⟹   ENSCLAP00000004781
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554651,042,649 - 1,122,824 (+)Ensembl
RefSeq Acc Id: XM_005398797   ⟹   XP_005398854
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554651,042,649 - 1,122,824 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005398854 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004781
  ENSCLAP00000004781.1
Reference Protein Sequences
RefSeq Acc Id: XP_005398854   ⟸   XM_005398797
- UniProtKB: A0A8C2UU18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004781   ⟸   ENSCLAT00000004871
Protein Domains
B30.2/SPRY   CTLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003398 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004871 ENTREZGENE
  ENSCLAT00000004871.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  CRA_dom UniProtKB/TrEMBL
  CTLH/CRA UniProtKB/TrEMBL
  CTLH_C UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_RanBP9/10 UniProtKB/TrEMBL
NCBI Gene Ranbp9 ENTREZGENE
PANTHER RAN BINDING PROTEIN 9-RELATED UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 9 UniProtKB/TrEMBL
Pfam CLTH UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  CTLH UniProtKB/TrEMBL
  LISH UniProtKB/TrEMBL
SMART CRA UniProtKB/TrEMBL
  CTLH UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A8C2UU18 ENTREZGENE, UniProtKB/TrEMBL