Hspa9 (heat shock protein family A (Hsp70) member 9) - Rat Genome Database

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Gene: Hspa9 (heat shock protein family A (Hsp70) member 9) Chinchilla lanigera
Analyze
Symbol: Hspa9
Name: heat shock protein family A (Hsp70) member 9
RGD ID: 8749983
Description: ENCODES a protein that exhibits chaperone binding (ortholog); enzyme binding (ortholog); fibroblast growth factor binding (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); erythrocyte differentiation (ortholog); iron-sulfur cluster assembly (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; presequence pathway of mitochondrial protein import; ASSOCIATED WITH Alzheimer's disease (ortholog); autoimmune disease (ortholog); autosomal dominant non-syndromic intellectual disability 31 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: heat shock 70kDa protein 9 (mortalin); stress-70 protein, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,915,985 - 1,931,017 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554181,915,985 - 1,931,017 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Hspa9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,915,985 - 1,931,017 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554181,915,985 - 1,931,017 (+)NCBIChiLan1.0ChiLan1.0
HSPA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5138,553,756 - 138,575,675 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl5138,553,756 - 138,575,416 (-)EnsemblGRCh38hg38GRCh38
GRCh385138,553,756 - 138,575,401 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375137,889,445 - 137,911,090 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,918,923 - 137,939,014 (-)NCBINCBI36hg18NCBI36
Build 345137,918,923 - 137,939,014NCBI
Celera5134,012,432 - 134,033,183 (-)NCBI
Cytogenetic Map5q31.2NCBI
HuRef5133,080,998 - 133,101,775 (-)NCBIHuRef
CHM1_15137,322,949 - 137,343,701 (-)NCBICHM1_1
Hspa9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,070,467 - 35,087,404 (-)NCBIGRCm39mm39
GRCm39 Ensembl1835,070,467 - 35,087,410 (-)Ensembl
GRCm381834,937,414 - 34,954,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,937,414 - 34,954,357 (-)EnsemblGRCm38mm10GRCm38
MGSCv371835,097,068 - 35,114,005 (-)NCBIGRCm37mm9NCBIm37
MGSCv361835,063,405 - 35,080,297 (-)NCBImm8
Celera1835,391,734 - 35,408,655 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.8NCBI
Hspa9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21826,536,131 - 26,554,294 (-)NCBI
Rnor_6.0 Ensembl1827,731,072 - 27,749,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01827,731,072 - 27,749,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01827,441,164 - 27,459,327 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,419,614 - 27,437,031 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11827,445,403 - 27,463,728 (-)NCBI
Celera1826,272,806 - 26,290,966 (-)NCBICelera
Cytogenetic Map18p12NCBI
HSPA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15140,064,207 - 140,084,551 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5140,064,207 - 140,084,551 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05133,934,859 - 133,955,048 (-)NCBIMhudiblu_PPA_v0panPan3
HSPA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11126,122,917 - 26,142,458 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1126,121,499 - 26,142,434 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,890,286 - 24,911,642 (-)NCBI
ROS_Cfam_1.01126,977,471 - 26,998,872 (-)NCBI
UMICH_Zoey_3.11125,684,920 - 25,708,764 (-)NCBI
UNSW_CanFamBas_1.01125,507,197 - 25,528,814 (-)NCBI
UU_Cfam_GSD_1.01126,171,421 - 26,192,815 (-)NCBI
Hspa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213153,895,035 - 153,908,810 (+)NCBI
SpeTri2.0NW_0049365317,702,186 - 7,716,428 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,515,246 - 140,531,845 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,515,239 - 140,532,164 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22146,230,077 - 146,246,697 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSPA9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12341,230,675 - 41,251,177 (-)NCBI
ChlSab1.1 Ensembl2341,231,364 - 41,251,150 (-)Ensembl
Hspa9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474331,324,085 - 31,345,681 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010341   ⟹   ENSCLAP00000010211
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554181,915,985 - 1,931,017 (+)Ensembl
RefSeq Acc Id: XM_005382096   ⟹   XP_005382153
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554181,915,985 - 1,931,017 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382153 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005382153   ⟸   XM_005382096
- Sequence:
RefSeq Acc Id: ENSCLAP00000010211   ⟸   ENSCLAT00000010341


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007065 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010211 ENTREZGENE
Ensembl Transcript ENSCLAT00000010341 ENTREZGENE
NCBI Gene Hspa9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Hspa9  heat shock protein family A (Hsp70) member 9    heat shock 70kDa protein 9 (mortalin)  Symbol and/or name change 5135510 APPROVED