Wdr62 (WD repeat domain 62) - Rat Genome Database

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Gene: Wdr62 (WD repeat domain 62) Chinchilla lanigera
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Symbol: Wdr62
Name: WD repeat domain 62
RGD ID: 8749713
Description: INVOLVED IN centriole replication (ortholog); cerebral cortex development (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); complex cortical dysplasia with other brain malformations (ortholog); Developmental Disabilities (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 62
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,503,885 - 2,545,255 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,504,181 - 2,545,982 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wdr62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,503,885 - 2,545,255 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,504,181 - 2,545,982 (-)NCBIChiLan1.0ChiLan1.0
WDR62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381936,054,897 - 36,111,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1936,054,649 - 36,105,108 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,545,799 - 36,596,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,237,623 - 41,287,852 (+)NCBINCBI36Build 36hg18NCBI36
Celera1933,259,959 - 33,310,190 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1933,051,308 - 33,101,495 (+)NCBIHuRef
CHM1_11936,547,139 - 36,597,353 (+)NCBICHM1_1
T2T-CHM13v2.01938,600,696 - 38,656,963 (+)NCBIT2T-CHM13v2.0
Wdr62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,939,563 - 29,980,243 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,939,563 - 29,979,844 (-)EnsemblGRCm39 Ensembl
GRCm38730,240,138 - 30,281,908 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,240,138 - 30,280,419 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,025,157 - 31,065,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,948,898 - 29,989,181 (-)NCBIMGSCv36mm8
Celera724,846,534 - 24,911,761 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.34NCBI
Wdr62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,618,992 - 94,658,097 (-)NCBIGRCr8
mRatBN7.2185,491,531 - 85,530,643 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,491,533 - 85,530,637 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,908,116 - 90,947,153 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,375,488 - 99,414,640 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,666,377 - 92,705,415 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0190,995,545 - 91,034,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,694,824 - 88,734,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,132,727 - 92,171,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,448,728 - 85,482,510 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,526,838 - 85,560,621 (+)NCBI
Celera179,865,970 - 79,905,079 (-)NCBICelera
Cytogenetic Map1q21NCBI
WDR62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22042,056,064 - 42,106,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11944,039,672 - 44,090,489 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,973,725 - 33,030,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,721,289 - 41,777,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,721,281 - 41,777,038 (+)Ensemblpanpan1.1panPan2
WDR62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,594,243 - 116,641,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,594,244 - 116,641,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,999,825 - 116,047,171 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,197,202 - 117,244,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,197,203 - 117,245,435 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,764,609 - 116,811,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,384,790 - 116,432,353 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,439,956 - 117,487,492 (-)NCBIUU_Cfam_GSD_1.0
Wdr62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,309,957 - 11,349,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692280,217 - 119,653 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692280,136 - 119,702 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,419,015 - 45,474,050 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,418,966 - 45,477,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,820,975 - 40,876,258 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,964,219 - 31,010,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,964,319 - 31,011,403 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,758,742 - 8,810,706 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,310,129 - 10,348,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,309,855 - 10,358,018 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000014664   ⟹   ENSCLAP00000014506
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554682,503,885 - 2,545,255 (-)Ensembl
RefSeq Acc Id: XM_013522434   ⟹   XP_013377888
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554682,504,181 - 2,545,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522435   ⟹   XP_013377889
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554682,504,181 - 2,545,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522436   ⟹   XP_013377890
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554682,504,181 - 2,545,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522437   ⟹   XP_013377891
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554682,504,721 - 2,545,982 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377888 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377889 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377890 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014506
  ENSCLAP00000014506.1
RefSeq Acc Id: XP_013377889   ⟸   XM_013522435
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013377890   ⟸   XM_013522436
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013377888   ⟸   XM_013522434
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VET1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377891   ⟸   XM_013522437
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSCLAP00000014506   ⟸   ENSCLAT00000014664


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010013 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014664 ENTREZGENE
  ENSCLAT00000014664.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro CCD_WD-repeat_protein UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Wdr62 ENTREZGENE
PANTHER WD REPEAT DOMAIN 62, ISOFORM G UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 62 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt A0A8C2VET1 ENTREZGENE, UniProtKB/TrEMBL