Patz1 (POZ/BTB and AT hook containing zinc finger 1) - Rat Genome Database

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Gene: Patz1 (POZ/BTB and AT hook containing zinc finger 1) Chinchilla lanigera
Analyze
Symbol: Patz1
Name: POZ/BTB and AT hook containing zinc finger 1
RGD ID: 8748761
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN male gonad development (ortholog); negative regulation of endothelial cell migration (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); high grade glioma (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: POZ (BTB) and AT hook containing zinc finger 1; POZ-, AT hook-, and zinc finger-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554555,542,659 - 5,565,154 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554555,544,841 - 5,566,630 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Patz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554555,542,659 - 5,565,154 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554555,544,841 - 5,566,630 (-)NCBIChiLan1.0ChiLan1.0
PATZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,325,804 - 31,346,346 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,325,804 - 31,346,346 (-)EnsemblGRCh38hg38GRCh38
GRCh372231,721,790 - 31,742,332 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362230,051,790 - 30,072,249 (-)NCBINCBI36Build 36hg18NCBI36
Build 342230,046,343 - 30,066,803NCBI
Celera2215,522,280 - 15,542,738 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2214,683,379 - 14,703,837 (-)NCBIHuRef
CHM1_12231,681,580 - 31,702,037 (-)NCBICHM1_1
T2T-CHM13v2.02231,789,769 - 31,810,306 (-)NCBIT2T-CHM13v2.0
Patz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,239,131 - 3,259,083 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,238,874 - 3,259,083 (+)EnsemblGRCm39 Ensembl
GRCm38113,289,131 - 3,309,083 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,288,874 - 3,309,083 (+)EnsemblGRCm38mm10GRCm38
MGSCv37113,190,460 - 3,208,520 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,190,460 - 3,208,520 (+)NCBIMGSCv36mm8
Celera113,781,391 - 3,799,451 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.3NCBI
Patz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,378,226 - 82,396,679 (+)NCBIGRCr8
mRatBN7.21478,154,590 - 78,173,032 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,152,516 - 78,173,032 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1482,595,751 - 82,614,012 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,835,865 - 83,854,125 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,281,599 - 80,299,861 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,509,763 - 83,528,898 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,510,278 - 83,528,898 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,198,755 - 84,217,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41483,905,714 - 83,936,768 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11483,915,647 - 83,934,526 (+)NCBI
Celera1477,068,978 - 77,087,236 (+)NCBICelera
Cytogenetic Map14q21NCBI
PATZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22341,281,520 - 41,301,945 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,979,999 - 44,000,659 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02212,349,691 - 12,370,273 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12230,211,812 - 30,232,106 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2230,211,812 - 30,232,106 (-)Ensemblpanpan1.1panPan2
PATZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12624,277,719 - 24,296,440 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2624,278,802 - 24,296,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2624,147,525 - 24,166,353 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,660,928 - 24,679,758 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2624,660,945 - 24,679,628 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12624,364,111 - 24,382,938 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,626,189 - 24,645,033 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,687,638 - 24,706,466 (-)NCBIUU_Cfam_GSD_1.0
Patz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118117,234,125 - 117,254,277 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936755491,656 - 511,812 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936755491,660 - 511,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PATZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1448,075,347 - 48,093,931 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11448,075,345 - 48,093,385 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21451,186,332 - 51,194,971 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PATZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11914,217,010 - 14,237,717 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1914,215,918 - 14,237,579 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045111,877,355 - 111,898,728 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Patz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247477,822,591 - 7,842,403 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247477,823,009 - 7,841,997 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025077   ⟹   ENSCLAP00000024837
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554555,542,659 - 5,565,154 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025078   ⟹   ENSCLAP00000024838
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554555,542,659 - 5,565,154 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025079   ⟹   ENSCLAP00000024839
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554555,546,305 - 5,560,475 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025080   ⟹   ENSCLAP00000024840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554555,546,319 - 5,556,059 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025081   ⟹   ENSCLAP00000024841
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554555,558,676 - 5,565,154 (-)Ensembl
RefSeq Acc Id: XM_005396307   ⟹   XP_005396364
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554555,544,841 - 5,566,630 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005396308   ⟹   XP_005396365
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554555,544,841 - 5,565,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005396309   ⟹   XP_005396366
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554555,559,530 - 5,565,691 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005396365   ⟸   XM_005396308
- Peptide Label: isoform X1
- UniProtKB: A0A8C2WC83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005396364   ⟸   XM_005396307
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005396366   ⟸   XM_005396309
- Peptide Label: isoform X2
- UniProtKB: A0A8C2WB09 (UniProtKB/TrEMBL),   A0A8C2W3Y8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024840   ⟸   ENSCLAT00000025080
RefSeq Acc Id: ENSCLAP00000024837   ⟸   ENSCLAT00000025077
RefSeq Acc Id: ENSCLAP00000024839   ⟸   ENSCLAT00000025079
RefSeq Acc Id: ENSCLAP00000024838   ⟸   ENSCLAT00000025078
RefSeq Acc Id: ENSCLAP00000024841   ⟸   ENSCLAT00000025081
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017053 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025077.1 UniProtKB/TrEMBL
  ENSCLAT00000025078 ENTREZGENE
  ENSCLAT00000025078.1 UniProtKB/TrEMBL
  ENSCLAT00000025079.1 UniProtKB/TrEMBL
  ENSCLAT00000025080.1 UniProtKB/TrEMBL
  ENSCLAT00000025081 ENTREZGENE
  ENSCLAT00000025081.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  HMGI/Y_DNA-bd_CS UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Patz1 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN-CONTAINING 11 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-C2H2_assoc3 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  HMGI_Y UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2W3Y8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W651_CHILA UniProtKB/TrEMBL
  A0A8C2W8W4_CHILA UniProtKB/TrEMBL
  A0A8C2WB09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2WC83 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Patz1  POZ/BTB and AT hook containing zinc finger 1    POZ (BTB) and AT hook containing zinc finger 1  Symbol and/or name change 5135510 APPROVED