Rpl7a (ribosomal protein L7a) - Rat Genome Database

Name: Rpl7a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rpl7a (ribosomal protein L7a) Chinchilla lanigera

Analyze

Symbol:

Rpl7a

Name:

ribosomal protein L7a

RGD ID:

8746965

Description:

ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cellular response to Thyroid stimulating hormone (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

60S ribosomal protein L7a

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL7A (ribosomal protein L7a)	NCBI	Ortholog
Mus musculus (house mouse):	Rpl7a (ribosomal protein L7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rpl7a (ribosomal protein L7A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL7A (ribosomal protein L7a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL7A (ribosomal protein L7a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl7a (ribosomal protein L7a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL7A (ribosomal protein L7a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPL7A (ribosomal protein L7a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl7a (ribosomal protein L7a)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	2,704,355 - 2,707,744 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	2,703,765 - 2,707,803 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 14 (ISO)

Ehlers-Danlos syndrome classic type 1 (ISO)

genetic disease (ISO)

Leigh disease (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Rafiq syndrome (ISO)

tuberous sclerosis 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to Thyroid stimulating hormone (ISO)

Cellular Component

cytoplasm (ISO)

cytosolic large ribosomal subunit (ISO)

cytosolic ribosome (ISO)

membrane (ISO)

nucleolus (ISO)

ribosome (ISO)

synapse (ISO)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Rpl7a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	2,704,355 - 2,707,744 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	2,703,765 - 2,707,803 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL7A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	133,348,218 - 133,351,426 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	133,348,218 - 133,351,426 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	136,215,073 - 136,218,281 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	135,204,890 - 135,208,101 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	133,244,622 - 133,247,834	NCBI
Celera	9	106,765,555 - 106,768,766 (+)	NCBI		Celera
Cytogenetic Map	9	q34.2	NCBI
HuRef	9	105,714,990 - 105,718,201 (+)	NCBI		HuRef
CHM1_1	9	136,365,233 - 136,368,444 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	145,562,158 - 145,565,366 (+)	NCBI		T2T-CHM13v2.0

Rpl7a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	26,800,697 - 26,803,330 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	26,800,776 - 26,803,330 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	26,910,685 - 26,913,312 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	26,910,764 - 26,913,318 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	26,766,327 - 26,768,831 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	26,732,816 - 26,735,320 (+)	NCBI		MGSCv36	mm8
Celera	2	26,620,552 - 26,623,056 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	19.1	NCBI

Rpl7a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	30,637,136 - 30,639,778 (+)	NCBI		GRCr8
mRatBN7.2	3	10,239,026 - 10,241,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	10,239,001 - 10,241,716 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	13,299,056 - 13,301,699 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	21,884,457 - 21,887,100 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	20,139,758 - 20,142,401 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	5,458,985 - 5,461,627 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	5,459,160 - 5,461,583 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	3	4,867,233 - 4,869,656 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	10,820,895 - 10,823,537 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	5,807,901 - 5,810,543 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	5,808,184 - 5,810,842 (+)	NCBI
Celera	3	5,037,091 - 5,039,733 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

RPL7A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	6,001,961 - 6,005,250 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	6,004,297 - 6,007,500 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	104,471,317 - 104,474,619 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	133,082,079 - 133,085,340 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	133,082,079 - 133,085,340 (+)	Ensembl	panpan1.1		panPan2

RPL7A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	49,783,635 - 49,786,328 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	49,783,635 - 49,786,328 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	49,065,123 - 49,067,816 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	50,657,666 - 50,660,359 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	50,657,666 - 50,660,359 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	49,420,135 - 49,422,793 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	49,761,579 - 49,764,276 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	49,839,585 - 49,842,275 (+)	NCBI		UU_Cfam_GSD_1.0

Rpl7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	199,840,472 - 199,842,829 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	3,532,139 - 3,534,586 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	3,532,139 - 3,534,586 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL7A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	272,959,831 - 272,965,634 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	272,961,421 - 272,965,636 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RPL7A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	4,165,087 - 4,165,974 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666058	199,236 - 202,791 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl7a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	1,811,544 - 1,815,144 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	1,811,442 - 1,815,144 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013506575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01066886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01149194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000009944 ⟹ ENSCLAP00000009815

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955513	2,704,355 - 2,707,744 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000009945 ⟹ ENSCLAP00000009816

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955513	2,704,720 - 2,707,744 (+)	Ensembl

RefSeq Acc Id:

XM_013506575 ⟹ XP_013362029

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955513	2,703,765 - 2,707,803 (+)	NCBI

Sequence:

show sequence

ATGACCTCAGCAGGCACTGCGAAGTCAGGGGCTGTCCCAGGCCCACCCCTCTCCCTGCGCAAGC
GCACCCAGCACCCGACAGGCCAGCTACACTGCCCAACCCAGCAGCCCCCAAGCCTCGGCCTGGC
CGCCGGTCCCCGTCGCTCCGATCCCGCCCTGCGTCCCGGGCCCCCTGGGGCCTTTTCCCTCCCA
GGCCCCGCCGCTCCAGGCCTTGGGGCTGCGTCCCCACAGGGAGGCCAGCCCCCCCAGGCACTCA
GGATCGCTCCGTGGTGCGCTTACCGATGCTTCTGCGGGCCAGGGCGCCCAGATGCAGCGTCTCC
GCCCCGGCCCACCTTGCGGCTGGGTGTTCTTGTGGAATCTATCCGCCGACATCCACTTCTGGGC
GCGGCCGCGCGGGGTCCGCGCTTCGGCCTGGCGTTGGGAGAGCTCTCCCGGGCATGGCAGGGAG
ACATTGAGCCGGCTGCCCCGCGACAGGGAGCGGATGGGCTGGCTGCTGTGCCGCCAGCTTGGAG
TTGGCTCGGGGCCCTGGCTGCGCCGGGCGGCGGCTGGCGATGTGCAGGACGTCGCCTTTCCAAG
GGTGCCGAGGACTGCCCGGCCGTGAGGCGCGCCGATGCGCGAGCAGCGCCGTCGCTAGGGCCGC
GGGCGAGGCTCGAGCCGGCTGCCGAACGCCCTTGGCGCCCCGTGCGGGAGTCGAGGAGCGGGGG
GCTTAATCGGGTTTTTCTTTCCGCTCAGCCGAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCC
CCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCCAAGAAGGTGGTAAATCCCCTGTTTGAGAAGA
GGCCGAAGAACTTCGGCATTGGACAGGACATCCAGCCCAAGAGAGATCTTACCCGCTTTGTGAA
ATGGCCCCGCTACATCCGGCTGCAGCGACAGAGGGCTATCCTGTATAAGCGGCTGAAGGTGCCT
CCTGCGATTAACCAGTTCACACAGGCCTTGGACCGCCAAACAGCTACCCAGCTGCTTAAGCTTG
CCCACAAGTACAGACCAGAGACTAAGCAAGAGAAGAAGCAGAGGCTGTTGGCCCGAGCAGAGAA
GAAAGCTGCTGGCAAAGGGGACGTCCCCACTAAGAGACCACCAGTCCTCAGAGCAGGTGTTAAT
ACTGTCACCACTCTGGTAGAGAACAAGAAGGCTCAGCTAGTGGTGATTGCGCACGACGTGGACC
CCATTGAGCTGGTGGTGTTCCTGCCTGCCCTGTGTCGCAAGATGGGTGTCCCTTACTGCATCAT
CAAGGGGAAGGCCAGGCTGGGGCGCCTGGTCCACAGGAAGACCTGCACCACTGTTGCCTTCACA
CAAGTCAACTCGGAAGACAAAGGCGCCCTGGCTAAGCTGGTGGAGGCAATCAGGACCAACTACA
ATGACAGATACGATGAGATCCGCCGTCACTGGGGAGGCAATGTCCTGGGCCCCAAATCTGTGGC
TCGCATCGCTAAGCTAGAAAAGGCAAAGGCTAAAGAACTTGCTACTAAACTGGGCTAAGTGTAC
TGTCTGCGTTTTCTGTACATAAAAATAATAAATCGTCCTTAATCTGGTGTGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013362029	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009815.1
	ENSCLAP00000009816.1

RefSeq Acc Id:

XP_013362029 ⟸ XM_013506575

- Sequence:

show sequence

MTSAGTAKSGAVPGPPLSLRKRTQHPTGQLHCPTQQPPSLGLAAGPRRSDPALRPGPPGAFSLP
GPAAPGLGAASPQGGQPPQALRIAPWCAYRCFCGPGRPDAASPPRPTLRLGVLVESIRRHPLLG
AAARGPRFGLALGELSRAWQGDIEPAAPRQGADGLAAVPPAWSWLGALAAPGGGWRCAGRRLSK
GAEDCPAVRRADARAAPSLGPRARLEPAAERPWRPVRESRSGGLNRVFLSAQPKGKKAKGKKVA
PAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVP
PAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVN
TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFT
QVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG

hide sequence

RefSeq Acc Id:

ENSCLAP00000009815 ⟸ ENSCLAT00000009944

RefSeq Acc Id:

ENSCLAP00000009816 ⟸ ENSCLAT00000009945

Protein Domains

Ribosomal protein eL8/eL30/eS12/Gadd45

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006800	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009944.1	UniProtKB/TrEMBL
	ENSCLAT00000009945.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1330.30	UniProtKB/TrEMBL
InterPro	L30e-like	UniProtKB/TrEMBL
	Ribosomal_L7A/L8	UniProtKB/TrEMBL
	Ribosomal_L7Ae/L30e/S12e/Gad45	UniProtKB/TrEMBL
	Ribosomal_L7Ae/L8/Nhp2	UniProtKB/TrEMBL
	Ribosomal_L7Ae_CS	UniProtKB/TrEMBL
NCBI Gene	Rpl7a	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L7A	UniProtKB/TrEMBL
	60S RIBOSOMAL PROTEIN L7A	UniProtKB/TrEMBL
	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	Ribosomal_L7Ae	UniProtKB/TrEMBL
PRINTS	L7ARS6FAMILY	UniProtKB/TrEMBL
	RIBOSOMALL7A	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L7AE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55315	UniProtKB/TrEMBL
UniProt	A0A8C2V433_CHILA	UniProtKB/TrEMBL
	A0A8C2YMM5_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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