| Gene: Nemp2 (nuclear envelope integral membrane protein 2) Chinchilla lanigera |
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Analyze |
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| Symbol: |
Nemp2 |
| Name: |
nuclear envelope integral membrane protein 2 |
| RGD ID: |
8745195 |
| Description: |
ASSOCIATED WITH genetic disease (ortholog); immunodeficiency 31B (ortholog); Neurodevelopmental Disorders (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
Tmem194b; transmembrane protein 194B |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| NCBI Annotation Information: |
Annotation category: partial on reference assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955403 | 8,596,778 - 8,618,508 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955403 | 8,602,056 - 8,620,417 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
Nemp2
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955403 | 8,596,778 - 8,618,508 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955403 | 8,602,056 - 8,620,417 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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NEMP2
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 190,421,421 - 190,648,785 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 190,504,338 - 190,534,722 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 191,369,064 - 191,399,448 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 191,077,313 - 191,108,164 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 2 | 184,966,557 - 184,994,411 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | q32.2 | NCBI | | | | | HuRef | 2 | 183,231,166 - 183,259,021 (-) | NCBI | | HuRef | | | CHM1_1 | 2 | 191,377,431 - 191,405,282 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 190,930,561 - 191,096,453 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Nemp2
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 52,669,850 - 52,691,078 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 52,669,862 - 52,691,078 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 52,568,535 - 52,651,919 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 52,630,703 - 52,651,919 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 52,687,549 - 52,708,763 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 52,575,292 - 52,595,181 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 53,171,476 - 53,192,690 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | C1.1 | NCBI | | | | | cM Map | 1 | 26.99 | NCBI | | | | |
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Nemp2
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 9 | 56,353,233 - 56,372,586 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 48,861,252 - 48,880,565 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 48,861,252 - 48,880,512 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 57,403,304 - 57,422,604 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 62,526,134 - 62,545,434 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 60,822,129 - 60,841,431 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 53,713,598 - 53,732,858 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 53,713,598 - 53,732,858 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 53,380,915 - 53,400,175 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 45,848,645 - 45,867,905 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 9 | 46,529,998 - 46,549,258 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | q22 | NCBI | | | | |
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NEMP2
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 13 | 93,172,608 - 93,217,039 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2B | 93,201,714 - 93,232,023 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2B | 77,792,444 - 77,836,649 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2B | 195,709,125 - 195,752,471 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2B | 195,727,677 - 195,744,992 (-) | Ensembl | panpan1.1 | | panPan2 | |
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NEMP2
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 37 | 1,073,117 - 1,104,249 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 37 | 1,085,482 - 1,096,484 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 37 | 2,024,384 - 2,053,286 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 37 | 962,678 - 991,577 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 37 | 970,288 - 991,743 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 37 | 972,716 - 1,001,544 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 37 | 940,563 - 969,417 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 37 | 969,154 - 998,068 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Nemp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405303 | 149,167,855 - 149,190,491 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936506 | 7,656,225 - 7,670,225 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936506 | 7,647,575 - 7,670,215 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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NEMP2
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 15 | 95,097,154 - 95,140,478 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 15 | 95,111,131 - 95,513,414 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 15 | 106,492,684 - 106,519,888 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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NEMP2
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 10 | 76,007,127 - 76,036,169 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 76,009,416 - 76,026,235 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666040 | 123,436,456 - 123,464,596 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Nemp2
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSCLAT00000019172 ⟹ ENSCLAP00000018987 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955403 | 8,596,778 - 8,618,508 (+) | Ensembl |
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| RefSeq Acc Id: |
XM_013512264 ⟹ XP_013367718 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955403 | 8,602,056 - 8,620,417 (+) | NCBI |
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| Sequence: |
CAAGGCTGTAAGTGGGCGGGGCGAGGCCGCGAGGAGGGGAGCCCCGCCCCCGCCCAACGCGGGT
TCCTCGGCGCCTTCCCGCGCGGGCGGCTGCGTTTCCGCCGCCACCTGGCGGCCGTCCGGAAGCC
GCGGGTCGGCGCGGCGATGTGGTGGCCGCCGCCCGCGCTGTGGGGGCCGCTGCTGTGGCTGCTG
CCCGCGGGCGCCGTGCGCGGGATGGACGCGGCGCTCTCAGCTTTAAGATGTAAAAATTTGAAGG
AAATGAATTTCATTGAAACTGCTGGGTCAGACTGTTACTGCTACAACCCAGATTCTCAAGTGCA
CTGGACGTATATGTGGTCAACTCTGCAGGTGAACATCAGCAGTCCAGTCCTCCTTAGTATTGTA
TATATCACAGAAAGACATAATTGCCGGTATCCAGAAACAATTCTATCTGTTATCAAATGTATAA
TCCATAACTTTTGGACACCAAAGGAGTCTAATAATGTAATGATAACCATCAGTCCATACAAGGA
GACTGTGTGCTTCATGGTGAAGCCCAGCAAGAAGGGCTTTGTCTATGCAATAAGTGTGAATCGA
AACATTGTGGATTTCAAACTCTTCCTTGTGTTTGTGGCAGGCATTGTCCTTTACTTTTATGCAA
AGACCTTGAGCCAAAGCCCCATTTTCTATTACTCCTCAGGGACTGTGCTAGGTGTTGTAATGAC
GTCAGTCTTTATCCTGCTATTGGTGAAAAGATACATCCCAAAGTATAGCACCTTTTGGGCTTTA
ATGGTTGGTTGTTGGTTTGCTTCAGTTTATGGTATATACCAATTCATGGAAGAGCTGAAGTGGC
TGTGGTACAGAAACGGAATATATATATTCGGCTATGTCCTGGTAGTTGCATTTTTAAGCTTTGC
TGCCTGTTACAAACACGGGCCCCTTGAGGCCAGGAGCAGAACTCTCCTGAAGTGGACGCTGCAG
TTGCTCTCCCTGGTCCTGATCTACGCTGGCGTGGCAGTGCCGCTGTTCGCCTACACCGTGATGT
TCGTGCTCCTGTGCTCCCCGAGTCTGCCCTACACCCTGAAAACTCTGAGCTGTCTGAAGCGGAG
AGCAAAGCAGTGGTTCACATCGAAGTGGCCAGTGGCGAAACACCTCACTGAGGACGAGTACAGG
GAGCAGGCTGAGGCAGAAACAGCCCGAGGTCTGGAGGACCTGCGCCAGGCCTGCCGCCAGCCCA
ACTTCCCGACGTGGCTGGCCGTCTCCAGACTCCAGGACCCTAAAAAATTTGCAGACTTTGTTCT
TGGATCGAGCCACTTGTCGCCTAAGGAGGTGAGTCTGCACGAAGCGCAGTATGGCCTTGGAGGC
GCCTTCCTGGAAGAGCAGCTTTTTACCTCGCGCCCGGATGGGCTCCCTGCGCATTGACCTGACG
CTGGCGCGGACGTGGGCAAAGGGCAAGGGTGCTGCTGAGAAGCAGCAGCTGTGGAGAAGAAGCA
GCCACACTGGGAAGGAAAATGGCCCAGGCTGTAAAGGACTTAGTGTTTGCGGCAAGTTCTGCCA
CCTGCTGTACGGGAGGCAGACGCCAAGCTTCCGTGACAGTCATTGCCCCCTGCCCTGAGTGAGG
CTTTCCTTAGCAACAAGGAAGTCATGGTGCCTGCCAAGGGACAGCAAGTGTGACAGGTGCCTTG
TAACACCAGGCACTTATCCTCTCTTAATCCCCTGAACCTGTGTCACAAGACGGCATTCCTCCCC
CTGCACTTCATCAGTATCAGTGCTGGGGGAGGCGTGGGACAGGCTGTTTCCGTGTTTTGTACAC
AATTCTGGTGTGGGCCAGGGATTCAGAGGTCAGCACAGATTGGGGTAAGGTTAATCGAATCTAC
TGCAGGACCTCTCAGAGCCTTGACGCTGGTGTACACTGTGGCTCTCATCAAAGGGAAAAATCGT
GGACGGTTTCTGACCGAATGTGACCACAGTGGCCTCTTTTATGAAGTTAATATTCCTTGGAACA
CATCATTGGAAAATGCTACCTGATGGTAGAATTGCAGTGTGGAGAAGGTAAACAACTTGTGGAG
CACAGAGCTAAGCAGAGGCAGCGCTGGCAGAACTCCAGTCCGGGGCGTCCCCTCGCTCTGAGAG
AGAGAAGCCGTCTTCAGACCCTCGCTGAGGGCTGGCCCTGCCGCCCGGGGCCGTGCAGTGTTGG
CTTCCTTTTTATTTTTTACTGTTCAGCAGTGACCATCGGGCTATTTAACAACTGTGATAAAGAG
AAACATTCCTTAAGATTATATTTTATAGTTTTGATAGGACTTCTACATACATTCATAAAGTCCA
GAAGTTACAATTATTTTTTATATGTTGAAATTGAAGGCATTTAAACTTTTGAGTCATTTTTAAA
AAGTTATTTAGCTATACATGTTTGTAATGATGTCCTACAAAATAGATGTGTGATATTTTTTACA
CAATTCTGTTTTGTTTCTTAACTCCTGATGTTATTAAACTCCAGAGCAAAATAAGGCCTGAATT
CTGACCGGGAGGAAAGGAGTCCAAAATGGGTCTGGGGTGTGAACACAGAAGAATGATCTGTGGG
CTGAGATGTAGCTGAATTGATTCTCCGAGAATCCAGCTCAGGCGTTTTTCTGATGGGGTCACGA
AGGATGAGGAATTTCTCTTATTAAGAGAACAGTCCCGGGGGAGGGACCTATGGGAAATCTTGTC
ACTGTTGATTTCCTGAGCCAGATTTAGTAGCGCTTTTTCACCTTGTTAGAGTGCTGCTACTCAG
AACTTGCTAGATTGATTTTCAAATGCTGTTTCCCCTTTGAGGCAGTATGTCAGTTTTTATAGTT
CTGCTTTTGCAAGACATCTTTTAATACTGGGAGCCTTGCTTTTTTTTCTTTTACAAACCTCACT
AAATTCACTTTGTGTCTTTTTATAGGCTGATTTTAAACAATCAGCACTTTTATAATGACGACTG
TTTTACAGGTGTAAACAGCAGTTCTGCATCATTTTTGTTACGGTTGAATCTGATTTTATTTTTT
ATAATTATATTTATTGGTGATGTCAGCGTATGAGATACAGCGATGCTGGTGCTAACCCGACTCG
CCTCCTGAGAGGCGCCTGTATCCTGCACGCTGCGGGTGGGACACGAGTGCCTGCGGGCAGGGGA
GCGCCCGGCCCCACGCCATGCCGTGTGACCACCACAGGCGGAACAGCTCGCGTGGGAGGAGGAC
AGCCTTCCGGGATACTGTTTTTCATGTTTGTTTTTAGGACAGATCACAGATTTGCCGGTTCTGT
TACATGAGTCCCGTGGGCAGTGAAACCATTAAAGGCATTACTGATA
hide sequence
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| RefSeq Acc Id: |
XP_013367718 ⟸ XM_013512264 |
| - UniProtKB: |
A0A8C2VQ43 (UniProtKB/TrEMBL) |
| - Sequence: |
MWWPPPALWGPLLWLLPAGAVRGMDAALSALRCKNLKEMNFIETAGSDCYCYNPDSQVHWTYMW
STLQVNISSPVLLSIVYITERHNCRYPETILSVIKCIIHNFWTPKESNNVMITISPYKETVCFM
VKPSKKGFVYAISVNRNIVDFKLFLVFVAGIVLYFYAKTLSQSPIFYYSSGTVLGVVMTSVFIL
LLVKRYIPKYSTFWALMVGCWFASVYGIYQFMEELKWLWYRNGIYIFGYVLVVAFLSFAACYKH
GPLEARSRTLLKWTLQLLSLVLIYAGVAVPLFAYTVMFVLLCSPSLPYTLKTLSCLKRRAKQWF
TSKWPVAKHLTEDEYREQAEAETARGLEDLRQACRQPNFPTWLAVSRLQDPKKFADFVLGSSHL
SPKEVSLHEAQYGLGGAFLEEQLFTSRPDGLPAH
hide sequence
|
| RefSeq Acc Id: |
ENSCLAP00000018987 ⟸ ENSCLAT00000019172 |
Additional Information
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2015-08-25 |
Nemp2 |
nuclear envelope integral membrane protein 2 |
Tmem194b |
transmembrane protein 194B |
Symbol and/or name change |
5135510 |
APPROVED |
|
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