Cxcl13 (C-X-C motif chemokine ligand 13) - Rat Genome Database

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Gene: Cxcl13 (C-X-C motif chemokine ligand 13) Chinchilla lanigera
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Symbol: Cxcl13
Name: C-X-C motif chemokine ligand 13
RGD ID: 8745040
Description: ENCODES a protein that exhibits CCR10 chemokine receptor binding (ortholog); chemokine activity (ortholog); CXCR3 chemokine receptor binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); B cell chemotaxis (ortholog); ASSOCIATED WITH endometriosis (ortholog); Experimental Liver Cirrhosis (ortholog); malignant mesothelioma (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C-X-C motif chemokine 13; chemokine (C-X-C motif) ligand 13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554332,123,190 - 2,129,119 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Cxcl13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554332,123,190 - 2,129,119 (+)NCBIChiLan1.0ChiLan1.0
CXCL13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl477,511,753 - 77,611,834 (+)EnsemblGRCh38hg38GRCh38
GRCh38477,511,753 - 77,611,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37478,432,907 - 78,532,988 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36478,651,931 - 78,752,010 (+)NCBINCBI36hg18NCBI36
Build 34478,790,084 - 78,890,165NCBI
Celera475,734,287 - 75,834,362 (+)NCBI
Cytogenetic Map4q21.1NCBI
HuRef474,184,783 - 74,284,964 (+)NCBIHuRef
CHM1_1478,409,854 - 78,509,941 (+)NCBICHM1_1
Cxcl13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39596,104,798 - 96,108,927 (+)NCBIGRCm39mm39
GRCm39 Ensembl596,104,810 - 96,108,927 (+)Ensembl
GRCm38595,956,939 - 95,961,068 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl595,956,951 - 95,961,068 (+)EnsemblGRCm38mm10GRCm38
MGSCv37596,385,958 - 96,390,087 (+)NCBIGRCm37mm9NCBIm37
MGSCv36596,197,241 - 96,201,370 (+)NCBImm8
Celera593,306,539 - 93,310,668 (+)NCBICelera
Cytogenetic Map5E3NCBI
Cxcl13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21413,608,894 - 13,613,965 (-)NCBI
Rnor_6.0 Ensembl1415,253,125 - 15,258,207 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01415,253,146 - 15,258,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01415,193,472 - 15,198,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41415,126,332 - 15,131,368 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1413,649,303 - 13,654,347 (-)NCBICelera
Cytogenetic Map14p22NCBI
CXCL13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1452,428,702 - 52,434,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl452,428,702 - 52,434,803 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0446,583,759 - 46,589,865 (-)NCBIMhudiblu_PPA_v0panPan3
CXCL13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1322,047,277 - 2,053,277 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl322,047,315 - 2,052,833 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3239,837,784 - 39,843,805 (-)NCBI
ROS_Cfam_1.0322,073,585 - 2,079,610 (+)NCBI
UMICH_Zoey_3.1322,071,444 - 2,077,479 (+)NCBI
UNSW_CanFamBas_1.0322,019,776 - 2,025,803 (+)NCBI
UU_Cfam_GSD_1.03238,148,529 - 38,154,567 (-)NCBI
Cxcl13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528510,191,903 - 10,197,633 (-)NCBI
SpeTri2.0NW_0049366761,309,625 - 1,314,532 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCL13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1873,071,261 - 73,077,342 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2877,268,254 - 77,274,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1726,101,489 - 26,108,430 (+)NCBI
ChlSab1.1 Ensembl726,102,714 - 26,108,690 (+)Ensembl
Vero_WHO_p1.0NW_0236660374,454,575 - 4,460,831 (+)NCBI
Cxcl13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475713,488,787 - 13,494,831 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005388194   ⟹   XP_005388251
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554332,123,190 - 2,129,119 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388251 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005388251   ⟸   XM_005388194
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003952 ENTREZGENE
Ensembl Protein ENSCLAP00000005572 ENTREZGENE
Ensembl Transcript ENSCLAT00000005673 ENTREZGENE
NCBI Gene Cxcl13 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cxcl13  C-X-C motif chemokine ligand 13    chemokine (C-X-C motif) ligand 13  Symbol and/or name change 5135510 APPROVED