Gnptab (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta) - Rat Genome Database

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Gene: Gnptab (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta) Chinchilla lanigera
Analyze
Symbol: Gnptab
Name: N-acetylglucosamine-1-phosphate transferase subunits alpha and beta
RGD ID: 8744635
Description: ENCODES a protein that exhibits UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity (ortholog); INVOLVED IN carbohydrate phosphorylation (ortholog); lysosome organization (ortholog); N-glycan processing to lysosome (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycoproteinosis (ortholog); Legg-Calve-Perthes disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: N-acetylglucosamine-1-phosphate transferase alpha and beta subunits; N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits; N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,107,542 - 37,136,993 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,107,902 - 37,136,993 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Gnptab
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,107,542 - 37,136,993 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,107,902 - 37,136,993 (-)NCBIChiLan1.0ChiLan1.0
GNPTAB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12101,745,499 - 101,830,959 (-)EnsemblGRCh38hg38GRCh38
GRCh3812101,745,499 - 101,830,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712102,139,277 - 102,224,737 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,663,408 - 100,748,763 (-)NCBINCBI36hg18NCBI36
Celera12101,803,304 - 101,888,673 (-)NCBI
Cytogenetic Map12q23.2NCBI
HuRef1299,198,884 - 99,284,601 (-)NCBIHuRef
CHM1_112102,105,957 - 102,191,339 (-)NCBICHM1_1
Gnptab
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,214,996 - 88,283,186 (+)NCBIGRCm39mm39
GRCm39 Ensembl1088,214,994 - 88,283,191 (+)Ensembl
GRCm381088,379,134 - 88,447,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,379,132 - 88,447,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,842,157 - 87,910,074 (+)NCBIGRCm37mm9NCBIm37
MGSCv361087,809,211 - 87,877,128 (+)NCBImm8
Celera1090,357,134 - 90,427,086 (+)NCBICelera
Cytogenetic Map10C1NCBI
Gnptab
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2722,800,502 - 22,866,336 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl728,956,512 - 29,022,868 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0728,956,363 - 29,023,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0729,063,329 - 29,130,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,084,137 - 25,149,880 (+)NCBIRGSC3.4rn4RGSC3.4
Celera719,960,704 - 20,027,442 (+)NCBICelera
Cytogenetic Map7q13NCBI
GNPTAB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112102,727,949 - 102,816,560 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,729,615 - 102,816,560 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01299,328,026 - 99,418,151 (-)NCBIMhudiblu_PPA_v0panPan3
GNPTAB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,659,108 - 40,724,498 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,631,279 - 40,704,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,027,451 - 41,092,978 (-)NCBI
ROS_Cfam_1.01541,313,158 - 41,378,930 (-)NCBI
UMICH_Zoey_3.11540,567,331 - 40,640,075 (-)NCBI
UNSW_CanFamBas_1.01540,676,876 - 40,742,356 (-)NCBI
UU_Cfam_GSD_1.01540,950,892 - 41,016,624 (-)NCBI
Gnptab
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,223,523 - 19,299,600 (+)NCBI
SpeTri2.0NW_00493649212,233,943 - 12,310,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPTAB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,361,871 - 82,460,814 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,352,843 - 86,413,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNPTAB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,998,671 - 97,084,333 (-)NCBI
ChlSab1.1 Ensembl1196,999,646 - 97,084,225 (-)Ensembl
Vero_WHO_p1.0NW_023666037147,919,739 - 148,005,708 (+)NCBI
Gnptab
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247506,315,949 - 6,344,919 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010860   ⟹   ENSCLAP00000010727
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540537,107,542 - 37,136,993 (-)Ensembl
RefSeq Acc Id: XM_013518708   ⟹   XP_013374162
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540537,107,902 - 37,136,993 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374162 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013374162   ⟸   XM_013518708
- Sequence:
RefSeq Acc Id: ENSCLAP00000010727   ⟸   ENSCLAT00000010860


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007404 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010727 ENTREZGENE
Ensembl Transcript ENSCLAT00000010860 ENTREZGENE
NCBI Gene Gnptab ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 Gnptab  N-acetylglucosamine-1-phosphate transferase subunits alpha and beta    N-acetylglucosamine-1-phosphate transferase alpha and beta subunits  Symbol and/or name change 5135510 APPROVED
2016-08-03 Gnptab  N-acetylglucosamine-1-phosphate transferase alpha and beta subunits    N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits  Symbol and/or name change 5135510 APPROVED