Znf575 (zinc finger protein 575) - Rat Genome Database

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Gene: Znf575 (zinc finger protein 575) Chinchilla lanigera
Analyze
Symbol: Znf575
Name: zinc finger protein 575
RGD ID: 8743684
Description: ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); genetic disease (ortholog); schizophrenia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,287,621 - 1,288,871 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,286,365 - 1,291,073 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf575
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,287,621 - 1,288,871 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,286,365 - 1,291,073 (+)NCBIChiLan1.0ChiLan1.0
ZNF575
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381943,530,835 - 43,536,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1943,525,497 - 43,536,130 (+)EnsemblGRCh38hg38GRCh38
GRCh371944,037,340 - 44,040,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361948,729,169 - 48,732,130 (+)NCBINCBI36Build 36hg18NCBI36
Build 341948,729,168 - 48,732,122NCBI
Celera1940,839,973 - 40,842,923 (+)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1940,468,016 - 40,470,966 (+)NCBIHuRef
CHM1_11944,038,991 - 44,041,941 (+)NCBICHM1_1
T2T-CHM13v2.01946,352,369 - 46,357,622 (+)NCBIT2T-CHM13v2.0
Zfp575
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,283,942 - 24,287,049 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,283,263 - 24,287,066 (-)EnsemblGRCm39 Ensembl
GRCm38724,583,838 - 24,587,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,583,838 - 24,587,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv37725,368,857 - 25,372,660 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,292,598 - 24,296,401 (-)NCBIMGSCv36mm8
Celera719,197,745 - 19,201,548 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map711.63NCBI
Zfp575
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,302,927 - 89,305,087 (-)NCBIGRCr8
mRatBN7.2180,175,016 - 80,177,176 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,175,016 - 80,177,123 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,566,766 - 85,568,873 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,118,460 - 94,120,567 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,322,515 - 87,324,622 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,447,987 - 81,450,156 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,447,987 - 81,450,094 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0182,707,389 - 82,709,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,866,608 - 79,868,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,944,776 - 79,946,874 (-)NCBI
Celera174,627,875 - 74,629,982 (-)NCBICelera
Cytogenetic Map1q21NCBI
ZNF575
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22049,690,576 - 49,695,047 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11951,559,525 - 51,569,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01940,474,034 - 40,479,751 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11949,076,135 - 49,087,066 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1949,077,130 - 49,087,066 (+)Ensemblpanpan1.1panPan2
ZNF575
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,576,454 - 111,579,583 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,576,849 - 111,578,702 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,056,583 - 111,059,301 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,187,003 - 112,189,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,184,983 - 112,189,316 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,775,258 - 111,777,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,408,926 - 111,411,644 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,293,206 - 112,295,924 (-)NCBIUU_Cfam_GSD_1.0
Znf575
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,398,847 - 16,406,942 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706751,185 - 752,414 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706749,032 - 752,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF575
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,396,338 - 50,399,178 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,395,042 - 50,398,868 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,150,122 - 46,154,356 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF575
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1637,050,158 - 37,052,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl637,050,665 - 37,052,585 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607316,591,812 - 16,594,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf575
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,082,294 - 1,083,571 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,081,224 - 1,085,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000002283   ⟹   ENSCLAP00000002237
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555551,287,621 - 1,288,871 (+)Ensembl
RefSeq Acc Id: XM_005412441   ⟹   XP_005412498
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555551,286,365 - 1,291,073 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412498 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002237
  ENSCLAP00000002237.1
Reference Protein Sequences
RefSeq Acc Id: XP_005412498   ⟸   XM_005412441
- UniProtKB: A0A8C2UQE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000002237   ⟸   ENSCLAT00000002283
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001612 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002283 ENTREZGENE
  ENSCLAT00000002283.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf575 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 575 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2UQE6 ENTREZGENE, UniProtKB/TrEMBL