Ndufa2 (NADH:ubiquinone oxidoreductase subunit A2) - Rat Genome Database

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Gene: Ndufa2 (NADH:ubiquinone oxidoreductase subunit A2) Chinchilla lanigera
Analyze
Symbol: Ndufa2
Name: NADH:ubiquinone oxidoreductase subunit A2
RGD ID: 8743323
Description: INVOLVED IN blastocyst hatching (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); Disease Progression (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541852,952 - 55,060 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541852,952 - 55,060 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ndufa2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541852,952 - 55,060 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541852,952 - 55,060 (+)NCBIChiLan1.0ChiLan1.0
NDUFA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,645,285 - 140,647,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,638,740 - 140,647,771 (-)EnsemblGRCh38hg38GRCh38
GRCh375140,024,870 - 140,027,215 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,005,142 - 140,007,424 (-)NCBINCBI36Build 36hg18NCBI36
Build 345140,005,142 - 140,007,424NCBI
Celera5136,101,693 - 136,104,115 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,170,185 - 135,172,607 (-)NCBIHuRef
CHM1_15139,458,184 - 139,460,605 (-)NCBICHM1_1
T2T-CHM13v2.05141,170,692 - 141,173,036 (-)NCBIT2T-CHM13v2.0
Ndufa2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,875,385 - 36,877,640 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,875,385 - 36,877,610 (-)EnsemblGRCm39 Ensembl
GRCm381836,742,332 - 36,744,587 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,742,332 - 36,744,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv371836,902,020 - 36,904,202 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,868,340 - 36,870,522 (-)NCBIMGSCv36mm8
Celera1837,194,431 - 37,196,613 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Ndufa2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,629,795 - 28,631,884 (-)NCBIGRCr8
mRatBN7.21828,355,774 - 28,357,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,355,774 - 28,358,076 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,482,924 - 28,485,013 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,244,998 - 29,247,087 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,580,226 - 28,582,315 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,585,671 - 29,587,760 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,585,671 - 29,587,760 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,289,478 - 29,291,567 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,441,774 - 29,443,863 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11829,468,442 - 29,470,480 (-)NCBI
Celera1828,076,327 - 28,078,416 (-)NCBICelera
Cytogenetic Map18p11NCBI
NDUFA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,903,192 - 135,905,375 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,042,742 - 134,044,926 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,010,029 - 136,012,373 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,126,686 - 142,129,126 (-)NCBIpanpan1.1PanPan1.1panPan2
NDUFA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,803,452 - 35,805,530 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,803,453 - 35,805,531 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,842,463 - 32,844,539 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,259,105 - 36,261,181 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,259,106 - 36,261,184 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,311,474 - 33,313,550 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,179,238 - 34,181,314 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,931,939 - 34,933,993 (-)NCBIUU_Cfam_GSD_1.0
Ndufa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,022,657 - 152,024,365 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365319,587,139 - 9,589,007 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,359,007 - 142,361,131 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,359,000 - 142,361,126 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,302,952 - 148,304,990 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,278,488 - 43,280,852 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,278,551 - 43,280,847 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,603,674 - 34,606,039 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,398,027 - 33,400,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,398,027 - 33,400,346 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017362   ⟹   ENSCLAP00000017193
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541852,952 - 55,060 (+)Ensembl
RefSeq Acc Id: XM_005382014   ⟹   XP_005382071
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541852,952 - 55,060 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017193
  ENSCLAP00000017193.1
Reference Protein Sequences
RefSeq Acc Id: XP_005382071   ⟸   XM_005382014
- UniProtKB: A0A8C2VQ48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017193   ⟸   ENSCLAT00000017362
Protein Domains
Ribosomal protein/NADH dehydrogenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011804 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017362 ENTREZGENE
  ENSCLAT00000017362.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro NADH_Ub_cplx-1_asu_su-2 UniProtKB/TrEMBL
  Ribosome/NADH_DH UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
NCBI Gene Ndufa2 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 2 UniProtKB/TrEMBL
  PTHR12878 UniProtKB/TrEMBL
Pfam L51_S25_CI-B8 UniProtKB/TrEMBL
PIRSF NDUA2 UniProtKB/TrEMBL
SMART L51_S25_CI-B8 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A8C2VQ48 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ndufa2  NADH:ubiquinone oxidoreductase subunit A2    NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa  Symbol and/or name change 5135510 APPROVED