Bmp3 (bone morphogenetic protein 3) - Rat Genome Database

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Gene: Bmp3 (bone morphogenetic protein 3) Chinchilla lanigera
Analyze
Symbol: Bmp3
Name: bone morphogenetic protein 3
RGD ID: 8742857
Description: ENCODES a protein that exhibits BMP receptor binding (ortholog); growth factor activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); Tibial Fractures (ortholog); FOUND IN extracellular space (ortholog); vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554335,211,592 - 5,246,194 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554335,194,312 - 5,246,125 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bmp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554335,211,592 - 5,246,194 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554335,194,312 - 5,246,125 (+)NCBIChiLan1.0ChiLan1.0
BMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38481,030,708 - 81,057,627 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl481,030,708 - 81,057,627 (+)EnsemblGRCh38hg38GRCh38
GRCh37481,951,862 - 81,978,781 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36482,171,143 - 82,197,709 (+)NCBINCBI36Build 36hg18NCBI36
Build 34482,309,297 - 82,331,904NCBI
Celera479,245,158 - 79,271,726 (+)NCBICelera
Cytogenetic Map4q21.21NCBI
HuRef477,696,010 - 77,722,586 (+)NCBIHuRef
CHM1_1481,928,619 - 81,955,186 (+)NCBICHM1_1
T2T-CHM13v2.0484,360,741 - 84,387,664 (+)NCBIT2T-CHM13v2.0
Bmp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39599,002,274 - 99,031,912 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl599,002,274 - 99,032,255 (+)EnsemblGRCm39 Ensembl
GRCm38598,854,415 - 98,884,053 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl598,854,415 - 98,884,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv37599,283,458 - 99,309,979 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36599,094,741 - 99,120,430 (+)NCBIMGSCv36mm8
Celera596,176,773 - 96,203,304 (+)NCBICelera
Cytogenetic Map5E3NCBI
cM Map548.24NCBI
Bmp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81411,012,564 - 11,041,282 (-)NCBIGRCr8
mRatBN7.21410,712,489 - 10,737,153 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1410,712,489 - 10,737,153 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1410,681,236 - 10,705,924 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01411,981,060 - 12,005,746 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01410,676,050 - 10,700,766 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01412,362,912 - 12,387,572 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1412,359,363 - 12,387,102 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01412,306,370 - 12,331,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41412,065,635 - 12,090,295 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11412,065,634 - 12,090,295 (-)NCBI
Celera1410,801,184 - 10,825,826 (-)NCBICelera
Cytogenetic Map14p22NCBI
BMP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2349,012,023 - 49,039,117 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1449,200,736 - 49,227,920 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0443,143,784 - 43,170,854 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1448,992,172 - 49,018,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl448,992,266 - 49,019,205 (-)Ensemblpanpan1.1panPan2
BMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1325,206,040 - 5,233,848 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl325,207,833 - 5,231,966 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3236,645,845 - 36,674,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0325,238,247 - 5,266,418 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl325,237,314 - 5,263,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1325,267,894 - 5,294,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0325,175,043 - 5,202,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03234,764,153 - 34,792,337 (-)NCBIUU_Cfam_GSD_1.0
Bmp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052857,106,302 - 7,130,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367491,025,546 - 1,053,902 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367491,025,867 - 1,053,578 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8136,880,456 - 136,904,739 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18136,880,456 - 136,904,739 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28146,174,734 - 146,199,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1729,454,394 - 29,482,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl729,455,761 - 29,482,896 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660377,954,672 - 7,982,356 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bmp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247579,956,293 - 9,980,234 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247579,952,847 - 9,980,259 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014297   ⟹   ENSCLAP00000014139
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554335,211,592 - 5,246,194 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014298   ⟹   ENSCLAP00000014140
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554335,234,429 - 5,242,402 (+)Ensembl
RefSeq Acc Id: XM_005388497   ⟹   XP_005388554
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554335,194,312 - 5,246,125 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014139.1
  ENSCLAP00000014140.1
Reference Protein Sequences
RefSeq Acc Id: XP_005388554   ⟸   XM_005388497
- Sequence:
RefSeq Acc Id: ENSCLAP00000014139   ⟸   ENSCLAT00000014297
RefSeq Acc Id: ENSCLAP00000014140   ⟸   ENSCLAT00000014298
Protein Domains
TGF-beta family profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009762 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014297.1 UniProtKB/TrEMBL
  ENSCLAT00000014298.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro BMP3/BMP3B UniProtKB/TrEMBL
  Cystine-knot_cytokine UniProtKB/TrEMBL
  TGF-b_C UniProtKB/TrEMBL
  TGF-beta-rel UniProtKB/TrEMBL
  TGFb_CS UniProtKB/TrEMBL
NCBI Gene LOC102007805 ENTREZGENE
PANTHER BONE MORPHOGENETIC PROTEIN 3 UniProtKB/TrEMBL
  PTHR11848 UniProtKB/TrEMBL
Pfam TGF_beta UniProtKB/TrEMBL
PIRSF BMP3/GDF10 UniProtKB/TrEMBL
PROSITE TGF_BETA_1 UniProtKB/TrEMBL
  TGF_BETA_2 UniProtKB/TrEMBL
SMART TGFB UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt A0A8C2VEC5_CHILA UniProtKB/TrEMBL
  A0A8C2VKX4_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Bmp3  bone morphogenetic protein 3  LOC102007805  uncharacterized LOC102007805  Symbol and/or name change 5135510 APPROVED