Fam53c (family with sequence similarity 53 member C) - Rat Genome Database

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Gene: Fam53c (family with sequence similarity 53 member C) Chinchilla lanigera
Analyze
Symbol: Fam53c
Name: family with sequence similarity 53 member C
RGD ID: 8741276
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: family with sequence similarity 53, member C
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,101,579 - 2,114,805 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,102,671 - 2,114,993 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam53c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,101,579 - 2,114,805 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,102,671 - 2,114,993 (-)NCBIChiLan1.0ChiLan1.0
FAM53C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,332,105 - 138,337,146 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,331,935 - 138,349,729 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,667,794 - 137,672,835 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,701,867 - 137,713,317 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,701,866 - 137,713,315NCBI
Celera5133,794,053 - 133,806,249 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,864,145 - 132,876,338 (+)NCBIHuRef
CHM1_15137,100,475 - 137,103,464 (+)NCBICHM1_1
T2T-CHM13v2.05138,858,324 - 138,863,363 (+)NCBIT2T-CHM13v2.0
FAM53C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24133,612,790 - 133,624,980 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15131,752,344 - 131,764,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,717,348 - 133,729,527 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,849,055 - 139,860,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,849,430 - 139,860,989 (+)Ensemblpanpan1.1panPan2
FAM53C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,940,360 - 25,951,314 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,943,864 - 26,023,866 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,709,503 - 24,720,615 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,796,321 - 26,807,433 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,796,627 - 26,807,420 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,503,348 - 25,514,425 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,326,179 - 25,337,300 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,990,371 - 26,001,483 (+)NCBIUU_Cfam_GSD_1.0
Fam53c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,092,321 - 154,106,431 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,505,396 - 7,519,384 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,505,506 - 7,519,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM53C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,330,836 - 140,343,187 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,330,601 - 140,343,212 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22146,029,698 - 146,042,573 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM53C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12341,012,466 - 41,024,622 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2341,016,255 - 41,021,859 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603436,863,108 - 36,875,658 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam53c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474331,130,371 - 31,144,593 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474331,130,499 - 31,144,314 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011049   ⟹   ENSCLAP00000010914
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554182,101,579 - 2,114,805 (-)Ensembl
RefSeq Acc Id: XM_005382112   ⟹   XP_005382169
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554182,102,671 - 2,114,805 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005382113   ⟹   XP_005382170
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554182,102,671 - 2,114,993 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005382115   ⟹   XP_005382172
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554182,102,671 - 2,114,960 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382169 (Get FASTA)   NCBI Sequence Viewer  
  XP_005382170 (Get FASTA)   NCBI Sequence Viewer  
  XP_005382172 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010914
  ENSCLAP00000010914.1
Reference Protein Sequences
RefSeq Acc Id: XP_005382170   ⟸   XM_005382113
- UniProtKB: A0A8C2VCH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005382172   ⟸   XM_005382115
- UniProtKB: A0A8C2VCH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005382169   ⟸   XM_005382112
- UniProtKB: A0A8C2VCH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010914   ⟸   ENSCLAT00000011049


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007533 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011049 ENTREZGENE
  ENSCLAT00000011049.1 UniProtKB/TrEMBL
InterPro FAM53 UniProtKB/TrEMBL
NCBI Gene Fam53c ENTREZGENE
PANTHER PROTEIN FAM53C UniProtKB/TrEMBL
  PTHR28567 UniProtKB/TrEMBL
Pfam FAM53 UniProtKB/TrEMBL
UniProt A0A8C2VCH7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Fam53c  family with sequence similarity 53 member C    family with sequence similarity 53, member C  Symbol and/or name change 5135510 APPROVED