Pip4k2a (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha) - Rat Genome Database
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Gene: Pip4k2a (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha) Chinchilla lanigera
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Symbol: Pip4k2a
Name: phosphatidylinositol-5-phosphate 4-kinase type 2 alpha
RGD ID: 8739478
Description: ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-5-phosphate 4-kinase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); autophagosome-lysosome fusion (ortholog); megakaryocyte development (ortholog); PARTICIPATES IN phosphoinositide metabolic pathway; ASSOCIATED WITH melanoma (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: phosphatidylinositol 5-phosphate 4-kinase type-2 alpha; phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554296,336,355 - 6,399,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554296,231,135 - 6,399,672 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
melanoma  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Pip4k2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554296,336,355 - 6,399,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554296,231,135 - 6,399,672 (+)NCBIChiLan1.0ChiLan1.0
PIP4K2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1022,534,854 - 22,714,578 (-)EnsemblGRCh38hg38GRCh38
GRCh381022,534,854 - 22,714,578 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371022,823,783 - 23,003,507 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371022,823,766 - 23,003,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361022,863,772 - 23,043,509 (-)NCBINCBI36hg18NCBI36
Build 341022,865,828 - 23,043,490NCBI
Celera1022,511,468 - 22,691,158 (-)NCBI
Cytogenetic Map10p12.2NCBI
HuRef1022,484,658 - 22,664,398 (-)NCBIHuRef
CHM1_11022,824,227 - 23,003,964 (-)NCBICHM1_1
Pip4k2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,847,066 - 19,003,101 (-)NCBIGRCm39mm39
GRCm38218,842,255 - 18,998,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,842,255 - 18,998,126 (-)EnsemblGRCm38mm10GRCm38
MGSCv37218,763,883 - 18,919,748 (-)NCBIGRCm37mm9NCBIm37
MGSCv36218,760,014 - 18,915,870 (-)NCBImm8
Celera218,734,163 - 18,892,750 (-)NCBICelera
Cytogenetic Map2A3NCBI
Pip4k2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21781,496,669 - 81,668,180 (-)NCBI
Rnor_6.01785,533,056 - 85,748,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01787,260,013 - 87,284,895 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01787,360,739 - 87,463,987 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41792,950,531 - 93,111,944 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11792,963,045 - 93,122,777NCBI
Celera1780,777,213 - 80,940,203 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
PIP4K2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11023,066,771 - 23,141,230 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01022,691,355 - 22,870,628 (-)NCBIMhudiblu_PPA_v0panPan3
PIP4K2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl210,463,010 - 10,640,327 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1210,464,019 - 10,642,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pip4k2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365205,383,737 - 5,540,176 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIP4K2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1052,223,425 - 52,408,922 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11052,224,367 - 52,408,928 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21057,880,198 - 58,064,685 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIP4K2A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1922,306,307 - 22,482,074 (-)NCBI
ChlSab1.1 Ensembl922,306,312 - 22,481,954 (-)Ensembl
Pip4k2a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247965,963,005 - 6,113,081 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010881   ⟹   ENSCLAP00000010748
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554296,336,355 - 6,399,672 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000010882   ⟹   ENSCLAP00000010749
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554296,372,835 - 6,397,511 (+)Ensembl
RefSeq Acc Id: XM_005387233   ⟹   XP_005387290
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554296,231,135 - 6,399,672 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387290 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005387290   ⟸   XM_005387233
- Sequence:
RefSeq Acc Id: ENSCLAP00000010748   ⟸   ENSCLAT00000010881
RefSeq Acc Id: ENSCLAP00000010749   ⟸   ENSCLAT00000010882


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007419 Ensembl
NCBI Gene Pip4k2a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Pip4k2a  phosphatidylinositol-5-phosphate 4-kinase type 2 alpha    phosphatidylinositol-5-phosphate 4-kinase, type II, alpha  Symbol and/or name change 5135510 APPROVED