Acd (ACD shelterin complex subunit and telomerase recruitment factor) - Rat Genome Database

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Gene: Acd (ACD shelterin complex subunit and telomerase recruitment factor) Chinchilla lanigera
Analyze
Symbol: Acd
Name: ACD shelterin complex subunit and telomerase recruitment factor
RGD ID: 8738750
Description: ENCODES a protein that exhibits DNA polymerase binding (ortholog); protein-containing complex binding (ortholog); telomeric DNA binding (ortholog); INVOLVED IN embryonic limb morphogenesis (ortholog); establishment of protein localization to telomere (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Autosomal Recessive Dyskeratosis Congenita 7 (ortholog); chromosome 16q22 deletion syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear body (ortholog); nuclear telomere cap complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ACD, shelterin complex subunit and telomerase recruitment factor; adrenocortical dysplasia homolog; adrenocortical dysplasia homolog (mouse); adrenocortical dysplasia protein homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,022,520 - 9,025,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,022,520 - 9,025,446 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,022,520 - 9,025,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,022,520 - 9,025,446 (+)NCBIChiLan1.0ChiLan1.0
ACD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,657,512 - 67,660,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,657,512 - 67,660,810 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,691,415 - 67,694,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,248,916 - 66,252,219 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,248,933 - 66,252,214NCBI
Celera1652,199,905 - 52,203,208 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,564,327 - 53,567,630 (-)NCBIHuRef
CHM1_11669,099,128 - 69,102,431 (-)NCBICHM1_1
T2T-CHM13v2.01673,452,280 - 73,455,028 (-)NCBIT2T-CHM13v2.0
Acd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,424,789 - 106,427,748 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,422,492 - 106,427,734 (-)EnsemblGRCm39 Ensembl
GRCm388105,698,155 - 105,701,228 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,695,860 - 105,701,102 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,222,059 - 108,224,995 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,587,288 - 108,590,224 (-)NCBIMGSCv36mm8
Celera8109,923,077 - 109,926,013 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Acd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,496,634 - 50,499,397 (-)NCBIGRCr8
mRatBN7.21933,586,739 - 33,589,481 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,586,745 - 33,589,461 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,402,316 - 40,405,008 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,055,648 - 41,058,340 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,353,421 - 43,356,113 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,665,289 - 37,668,043 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,665,296 - 37,667,987 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,531,999 - 48,534,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,530,557 - 35,533,249 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1933,014,692 - 33,017,384 (-)NCBICelera
Cytogenetic Map19q12NCBI
ACD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,185,709 - 77,188,986 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,098,176 - 83,101,453 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,001,408 - 48,004,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,390,703 - 67,393,685 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,390,703 - 67,393,685 (-)Ensemblpanpan1.1panPan2
ACD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,789,915 - 81,792,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,789,997 - 81,792,639 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,779,673 - 81,782,484 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,225,079 - 82,227,897 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,225,104 - 82,286,231 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,051,408 - 82,054,221 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,732,943 - 81,735,752 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,375,492 - 82,378,294 (+)NCBIUU_Cfam_GSD_1.0
Acd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,536,955 - 41,539,974 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,045,662 - 18,052,172 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,049,134 - 18,052,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,277,614 - 28,280,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,277,649 - 28,280,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ACD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,783,842 - 59,787,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,784,178 - 59,787,032 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,537,668 - 22,540,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,689,364 - 18,695,944 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,688,898 - 18,692,216 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000007720   ⟹   ENSCLAP00000007602
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554849,022,520 - 9,025,446 (+)Ensembl
RefSeq Acc Id: XM_005403635   ⟹   XP_005403692
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554849,022,520 - 9,025,446 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005403692 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007602
  ENSCLAP00000007602.1
RefSeq Acc Id: XP_005403692   ⟸   XM_005403635
- UniProtKB: A0A8C2V0P8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007602   ⟸   ENSCLAT00000007720

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005336 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007720 ENTREZGENE
  ENSCLAT00000007720.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.960 UniProtKB/TrEMBL
InterPro ACD UniProtKB/TrEMBL
  TPP1/Est3 UniProtKB/TrEMBL
NCBI Gene Acd ENTREZGENE
PANTHER ADRENOCORTICAL DYSPLASIA PROTEIN HOMOLOG UniProtKB/TrEMBL
  PTHR14487 UniProtKB/TrEMBL
Pfam TPP1 UniProtKB/TrEMBL
UniProt A0A8C2V0P8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-22 Acd  ACD shelterin complex subunit and telomerase recruitment factor    ACD, shelterin complex subunit and telomerase recruitment factor  Symbol and/or name change 5135510 APPROVED
2016-11-08 Acd  ACD, shelterin complex subunit and telomerase recruitment factor    adrenocortical dysplasia homolog  Symbol and/or name change 5135510 APPROVED
2016-08-03 Acd  adrenocortical dysplasia homolog    adrenocortical dysplasia homolog (mouse)  Symbol and/or name change 5135510 APPROVED