Mtmr4 (myotubularin related protein 4) - Rat Genome Database

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Gene: Mtmr4 (myotubularin related protein 4) Chinchilla lanigera
Analyze
Symbol: Mtmr4
Name: myotubularin related protein 4
RGD ID: 8738667
Description: ENCODES a protein that exhibits protein phosphatase binding (ortholog); INVOLVED IN regulation of phosphatidylinositol dephosphorylation (ortholog); response to denervation involved in regulation of muscle adaptation (ortholog); ASSOCIATED WITH Fanconi anemia complementation group O (ortholog); Joubert syndrome (ortholog); malignant mesothelioma (ortholog); FOUND IN endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554514,532,295 - 4,558,225 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554514,531,966 - 4,557,528 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Mtmr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554514,532,295 - 4,558,225 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554514,531,966 - 4,557,528 (+)NCBIChiLan1.0ChiLan1.0
MTMR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381758,489,537 - 58,519,047 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1758,489,529 - 58,517,905 (-)EnsemblGRCh38hg38GRCh38
GRCh371756,566,898 - 56,595,241 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361753,921,897 - 53,950,211 (-)NCBINCBI36hg18NCBI36
Build 341753,921,896 - 53,950,211NCBI
Celera1753,028,691 - 53,057,049 (-)NCBI
Cytogenetic Map17q22NCBI
HuRef1751,927,353 - 51,955,501 (-)NCBIHuRef
CHM1_11756,632,457 - 56,660,825 (-)NCBICHM1_1
T2T-CHM13v2.01759,357,413 - 59,385,751 (-)NCBI
Mtmr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,482,780 - 87,507,128 (+)NCBIGRCm39mm39
GRCm39 Ensembl1187,482,988 - 87,507,128 (+)Ensembl
GRCm381187,591,954 - 87,616,302 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,592,162 - 87,616,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,405,719 - 87,429,798 (+)NCBIGRCm37mm9NCBIm37
MGSCv361187,408,412 - 87,432,491 (+)NCBImm8
Celera1197,187,562 - 97,211,641 (+)NCBICelera
Cytogenetic Map11CNCBI
Mtmr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21072,393,411 - 72,416,342 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1072,392,551 - 72,416,342 (+)Ensembl
Rnor_6.01074,886,600 - 74,909,532 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,886,985 - 74,909,533 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,192,507 - 75,215,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,883,526 - 75,906,440 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11075,896,715 - 75,918,774 (+)NCBI
Celera1071,307,233 - 71,330,165 (+)NCBICelera
Cytogenetic Map10q26NCBI
MTMR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11757,418,229 - 57,446,539 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1757,418,229 - 57,446,545 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01752,564,455 - 52,592,899 (-)NCBIMhudiblu_PPA_v0panPan3
MTMR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,110,983 - 33,136,843 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,112,143 - 33,136,684 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,346,134 - 32,372,514 (-)NCBI
ROS_Cfam_1.0933,917,037 - 33,943,425 (-)NCBI
ROS_Cfam_1.0 Ensembl933,917,038 - 33,942,605 (-)Ensembl
UMICH_Zoey_3.1932,703,682 - 32,730,052 (-)NCBI
UNSW_CanFamBas_1.0932,987,246 - 33,013,417 (-)NCBI
UU_Cfam_GSD_1.0933,079,196 - 33,105,587 (-)NCBI
Mtmr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,436,863 - 32,463,669 (-)NCBI
SpeTri2.0NW_0049364904,611,350 - 4,638,181 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1234,745,236 - 34,771,167 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11234,745,232 - 34,771,315 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21236,044,693 - 36,069,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,889,637 - 34,918,101 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1634,890,764 - 34,918,263 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660775,704,030 - 5,732,484 (+)NCBIVero_WHO_p1.0
Mtmr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624871302,588 - 328,623 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624871302,589 - 328,773 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018268   ⟹   ENSCLAP00000018090
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554514,532,295 - 4,537,705 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018269   ⟹   ENSCLAP00000018091
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554514,533,262 - 4,558,225 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018270   ⟹   ENSCLAP00000018092
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554514,535,567 - 4,558,225 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018271   ⟹   ENSCLAP00000018093
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554514,537,092 - 4,555,468 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018272   ⟹   ENSCLAP00000018094
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554514,537,092 - 4,555,468 (+)Ensembl
RefSeq Acc Id: XM_005394015   ⟹   XP_005394072
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554514,535,567 - 4,557,528 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005394016   ⟹   XP_005394073
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554514,531,966 - 4,557,528 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519397   ⟹   XP_013374851
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554514,532,295 - 4,557,528 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519398   ⟹   XP_013374852
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554514,532,219 - 4,557,528 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394072 (Get FASTA)   NCBI Sequence Viewer  
  XP_005394073 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374851 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374852 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005394073   ⟸   XM_005394016
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005394072   ⟸   XM_005394015
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374852   ⟸   XM_013519398
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013374851   ⟸   XM_013519397
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000018090   ⟸   ENSCLAT00000018268
RefSeq Acc Id: ENSCLAP00000018091   ⟸   ENSCLAT00000018269
RefSeq Acc Id: ENSCLAP00000018092   ⟸   ENSCLAT00000018270
RefSeq Acc Id: ENSCLAP00000018093   ⟸   ENSCLAT00000018271
RefSeq Acc Id: ENSCLAP00000018094   ⟸   ENSCLAT00000018272

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012407 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000018090.1 UniProtKB/TrEMBL
  ENSCLAP00000018091 ENTREZGENE
  ENSCLAP00000018091.1 UniProtKB/TrEMBL
  ENSCLAP00000018092.1 UniProtKB/TrEMBL
  ENSCLAP00000018093 ENTREZGENE
  ENSCLAP00000018093.1 UniProtKB/TrEMBL
  ENSCLAP00000018094.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018268.1 UniProtKB/TrEMBL
  ENSCLAT00000018269 ENTREZGENE
  ENSCLAT00000018269.1 UniProtKB/TrEMBL
  ENSCLAT00000018270.1 UniProtKB/TrEMBL
  ENSCLAT00000018271 ENTREZGENE
  ENSCLAT00000018271.1 UniProtKB/TrEMBL
  ENSCLAT00000018272.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro MTMR4 UniProtKB/TrEMBL
  MTMR4_PH-GRAM UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Mtmr4 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF64 UniProtKB/TrEMBL
Pfam FYVE UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/TrEMBL
SMART FYVE UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A8C2VN89_CHILA UniProtKB/TrEMBL
  A0A8C2VQE7_CHILA UniProtKB/TrEMBL
  A0A8C2VS85_CHILA UniProtKB/TrEMBL
  A0A8C2VV45_CHILA UniProtKB/TrEMBL
  A0A8C2VVG9_CHILA UniProtKB/TrEMBL