Ccdc70 (coiled-coil domain containing 70)

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Gene: Ccdc70 (coiled-coil domain containing 70) Chinchilla lanigera

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Symbol:

Ccdc70

Name:

coiled-coil domain containing 70

RGD ID:

8736240

Description:

ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); Wilson disease (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 70

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	5,166,451 - 5,170,263 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	5,166,451 - 5,170,263 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 13q14 deletion syndrome (ISO)

intellectual disability (ISO)

Wilson disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

plasma membrane (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Ccdc70
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	5,166,451 - 5,170,263 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	5,166,451 - 5,170,263 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC70
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	51,861,969 - 51,866,232 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	51,861,969 - 51,866,232 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	52,436,105 - 52,440,368 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	51,334,118 - 51,338,373 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	33,484,752 - 33,489,009 (+)	NCBI		Celera
Cytogenetic Map	13	q14.3	NCBI
HuRef	13	33,224,665 - 33,228,925 (+)	NCBI		HuRef
CHM1_1	13	52,402,803 - 52,407,058 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	51,076,664 - 51,080,932 (+)	NCBI		T2T-CHM13v2.0

Ccdc70
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	22,459,791 - 22,464,071 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	22,459,791 - 22,464,057 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	21,969,775 - 21,974,055 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	21,969,775 - 21,974,041 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	23,081,068 - 23,084,513 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	23,436,141 - 23,439,586 (+)	NCBI		MGSCv36	mm8
Celera	8	23,466,734 - 23,470,179 (+)	NCBI		Celera
Cytogenetic Map	8	A2	NCBI
cM Map	8	10.73	NCBI

Ccdc70
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	76,739,795 - 76,745,019 (-)	NCBI		GRCr8
mRatBN7.2	16	70,037,309 - 70,042,401 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	70,037,309 - 70,042,339 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	75,311,016 - 75,315,175 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	78,749,909 - 78,754,060 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	73,999,239 - 74,003,390 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	74,958,897 - 74,963,925 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	74,958,897 - 74,963,044 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	74,588,763 - 74,592,932 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	74,694,594 - 74,699,743 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	67,921,841 - 67,926,867 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

CCDC70
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	53,296,249 - 53,303,786 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	51,940,430 - 51,947,971 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	32,991,931 - 32,997,329 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	51,738,467 - 51,742,786 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	51,741,930 - 51,742,631 (+)	Ensembl	panpan1.1		panPan2

CCDC70
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	258,746 - 263,908 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	258,880 - 259,563 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	294,401 - 299,601 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	241,731 - 246,931 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	241,865 - 242,524 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	162,936 - 168,137 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	212,548 - 217,749 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	230,532 - 235,734 (-)	NCBI		UU_Cfam_GSD_1.0

CCDC70
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	15,977,289 - 15,977,945 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	15,976,814 - 15,978,050 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	16,336,219 - 16,343,715 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC70
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	29,745,345 - 29,749,711 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	29,748,861 - 29,749,559 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	14,065,509 - 14,067,523 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc70
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	2,280,239 - 2,280,880 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	2,280,183 - 2,283,892 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005387609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005387610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01030016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01001040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000006690 ⟹ ENSCLAP00000006581

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955431	5,166,451 - 5,170,263 (+)	Ensembl

RefSeq Acc Id:

XM_005387609 ⟹ XP_005387666

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	5,166,451 - 5,170,263 (+)	NCBI

Sequence:

show sequence

GTCACGACAGGCAAGGCTGTGAGCGCGCATCACCAGGGCTCTGACACCACAATGGCCGCTTGCC
TTCTGAGGGCTATAGTGCATGGCCTGCTGGGAAACAGCTAAGCTGGTGTAACCAGCCATCAGGA
CTTGGCCAGGAGCCCTGTCCCCTGTGATGGCCATTTCATCAATCTGGCTGATGAAGAAGATGTT
TTCCTTCAAGGTGAGCAAATGGATGGGACCTGCTTGCCTCCGGCCAATGGTAGTCCCACCCAAT
ATTCGACAGGAGAAACTAATTTACAAGCTGCAGGAGGAAAAGACTTTTCGGGAAGAGATGAAGA
TTTTCCATAAGAAAATAGAAGACTTCAGGGAAGAGATACAGAATTTCCGAGGCAAGATCTGTGT
TTTCCGGGGCCAGATGTTGGATTTTGGGGAAGAGGAGAAACCTTTCTGGGAAGAGGAAAAGACT
TTCTGGAAAGAGGAAAAAACTTTCTGGGAAATGGAAAAATCTTTCCGGGAAGAAGAAAAAACAT
TTTGGAAAAAATACCGTACCTTTTGGAAGCAGGATAAGGCCTTCTGGAAAGAGGACAATGCCTT
ATGGGAAAAAGACCGAAAACTTCTTCAGGAGGACAAGGCCCTATGGGAGGAAGAAAAGGCCCTG
TGGGTAGAGGAAAGAGCCCTCCTTAAGGAAGAGAAGGCCCTGTGGGAGGATAAAAAGTCCCTCT
GGGAGGAAGAGAATGCCCTCTGGGAGGAAGAGAAAGCATTCTGGGTGGAAGGCGGCCACATTGG
TATGGAGCAGGTGCCCCAAGACAGGCCACAAAGGGCAGCTTTACCCCGAGGCCCAGCATAGTGA
CCACTCGACTTGCAGAGCCAAGGTATCCAGACTCTACTGGATTGGGATCCAAGTCCACAGTGAT
CCCCAATGCTACCGTAAATACGCACTTATTTGTCTCCTTGCTTTGAAAGATCTAATAAAATTCT
GAGGAGAGGTTTGAAAAACTAG

hide sequence

RefSeq Acc Id:

XM_005387610 ⟹ XP_005387667

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	5,166,555 - 5,170,263 (+)	NCBI

Sequence:

show sequence

AGCTGTAAGTAGCTGTTGGCTTTAGGTTATATAGTATTGTATAGTATGTTAGATCAATCCTAGT
TTTGAAGTGTGATTATGAAGACTAGGGTGTAACCAGCCATCAGGACTTGGCCAGGAGCCCTGTC
CCCTGTGATGGCCATTTCATCAATCTGGCTGATGAAGAAGATGTTTTCCTTCAAGGTGAGCAAA
TGGATGGGACCTGCTTGCCTCCGGCCAATGGTAGTCCCACCCAATATTCGACAGGAGAAACTAA
TTTACAAGCTGCAGGAGGAAAAGACTTTTCGGGAAGAGATGAAGATTTTCCATAAGAAAATAGA
AGACTTCAGGGAAGAGATACAGAATTTCCGAGGCAAGATCTGTGTTTTCCGGGGCCAGATGTTG
GATTTTGGGGAAGAGGAGAAACCTTTCTGGGAAGAGGAAAAGACTTTCTGGAAAGAGGAAAAAA
CTTTCTGGGAAATGGAAAAATCTTTCCGGGAAGAAGAAAAAACATTTTGGAAAAAATACCGTAC
CTTTTGGAAGCAGGATAAGGCCTTCTGGAAAGAGGACAATGCCTTATGGGAAAAAGACCGAAAA
CTTCTTCAGGAGGACAAGGCCCTATGGGAGGAAGAAAAGGCCCTGTGGGTAGAGGAAAGAGCCC
TCCTTAAGGAAGAGAAGGCCCTGTGGGAGGATAAAAAGTCCCTCTGGGAGGAAGAGAATGCCCT
CTGGGAGGAAGAGAAAGCATTCTGGGTGGAAGGCGGCCACATTGGTATGGAGCAGGTGCCCCAA
GACAGGCCACAAAGGGCAGCTTTACCCCGAGGCCCAGCATAGTGACCACTCGACTTGCAGAGCC
AAGGTATCCAGACTCTACTGGATTGGGATCCAAGTCCACAGTGATCCCCAATGCTACCGTAAAT
ACGCACTTATTTGTCTCCTTGCTTTGAAAGATCTAATAAAATTCTGAGGAGAGGTTTGAAAAAC
TAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005387666	(Get FASTA)	NCBI Sequence Viewer
	XP_005387667	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000006581
	ENSCLAP00000006581.1

RefSeq Acc Id:

XP_005387666 ⟸ XM_005387609

- Sequence:

show sequence

MAISSIWLMKKMFSFKVSKWMGPACLRPMVVPPNIRQEKLIYKLQEEKTFREEMKIFHKKIEDF
REEIQNFRGKICVFRGQMLDFGEEEKPFWEEEKTFWKEEKTFWEMEKSFREEEKTFWKKYRTFW
KQDKAFWKEDNALWEKDRKLLQEDKALWEEEKALWVEERALLKEEKALWEDKKSLWEEENALWE
EEKAFWVEGGHIGMEQVPQDRPQRAALPRGPA

hide sequence

RefSeq Acc Id:

XP_005387667 ⟸ XM_005387610

- Sequence:

show sequence

MAISSIWLMKKMFSFKVSKWMGPACLRPMVVPPNIRQEKLIYKLQEEKTFREEMKIFHKKIEDF
REEIQNFRGKICVFRGQMLDFGEEEKPFWEEEKTFWKEEKTFWEMEKSFREEEKTFWKKYRTFW
KQDKAFWKEDNALWEKDRKLLQEDKALWEEEKALWVEERALLKEEKALWEDKKSLWEEENALWE
EEKAFWVEGGHIGMEQVPQDRPQRAALPRGPA

hide sequence

Ensembl Acc Id:

ENSCLAP00000006581 ⟸ ENSCLAT00000006690

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000004639	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000006690	ENTREZGENE
	ENSCLAT00000006690.1	UniProtKB/TrEMBL
InterPro	GOLGA6L	UniProtKB/TrEMBL
NCBI Gene	Ccdc70	ENTREZGENE
PANTHER	SPERMATID-ASSOCIATED-LIKE	UniProtKB/TrEMBL
	TRICHOHYALIN-RELATED	UniProtKB/TrEMBL
UniProt	A0A8C2UYA3_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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