Tmem167b (transmembrane protein 167B) - Rat Genome Database

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Gene: Tmem167b (transmembrane protein 167B) Chinchilla lanigera
Analyze
Symbol: Tmem167b
Name: transmembrane protein 167B
RGD ID: 8735933
Description: INVOLVED IN constitutive secretory pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,510,462 - 12,517,048 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,510,867 - 12,516,789 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Tmem167b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,510,462 - 12,517,048 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,510,867 - 12,516,789 (+)NCBIChiLan1.0ChiLan1.0
TMEM167B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,090,764 - 109,096,934 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,090,764 - 109,096,934 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,633,386 - 109,639,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,434,926 - 109,441,077 (+)NCBINCBI36Build 36hg18NCBI36
Celera1107,902,782 - 107,908,934 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,526,280 - 107,532,775 (+)NCBIHuRef
CHM1_11109,748,049 - 109,754,200 (+)NCBICHM1_1
T2T-CHM13v2.01109,123,630 - 109,129,800 (+)NCBIT2T-CHM13v2.0
Tmem167b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,463,741 - 108,469,782 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,463,741 - 108,469,782 (-)EnsemblGRCm39 Ensembl
GRCm383108,556,425 - 108,562,466 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,556,425 - 108,562,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv373108,359,343 - 108,365,384 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,684,481 - 108,690,435 (-)NCBIMGSCv36mm8
Celera3110,891,308 - 110,897,349 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.31NCBI
Tmem167b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,882,471 - 198,886,249 (-)NCBIGRCr8
mRatBN7.22196,194,355 - 196,198,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,051,477 - 25,051,701 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2196,192,185 - 196,198,158 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,838,274 - 203,842,041 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,720,331 - 201,729,214 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02025,683,839 - 25,684,381 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,348,762 - 211,352,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,348,762 - 211,352,540 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,818,557 - 230,822,325 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,125,764 - 204,129,449 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2188,839,827 - 188,843,605 (-)NCBICelera
Cytogenetic Map2q34NCBI
TMEM167B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,207,565 - 118,216,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,367,626 - 117,378,727 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,466,150 - 111,473,347 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,630,017 - 110,637,920 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,630,017 - 110,637,920 (+)Ensemblpanpan1.1panPan2
TMEM167B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,696,240 - 42,702,135 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,698,543 - 42,701,986 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,470,933 - 45,476,829 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,027,653 - 43,033,545 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,027,655 - 43,033,496 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,758,825 - 42,764,711 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,716,896 - 42,722,774 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,152,017 - 43,157,906 (-)NCBIUU_Cfam_GSD_1.0
Tmem167b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,475,961 - 19,482,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704631,836 - 638,525 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704631,909 - 638,185 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM167B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,965,939 - 110,971,481 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,965,891 - 110,971,509 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,460,330 - 121,465,910 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103224303
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,445,590 - 24,453,049 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603834,001,305 - 34,004,972 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem167b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,853,180 - 4,858,871 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,852,729 - 4,858,871 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008008   ⟹   ENSCLAP00000007888
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543512,510,462 - 12,517,048 (+)Ensembl
RefSeq Acc Id: XM_005388845   ⟹   XP_005388902
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543512,510,867 - 12,516,789 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388902 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007888
  ENSCLAP00000007888.1
Reference Protein Sequences
RefSeq Acc Id: XP_005388902   ⟸   XM_005388845
- UniProtKB: A0A8C2V2P2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007888   ⟸   ENSCLAT00000008008


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005530 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008008 ENTREZGENE
  ENSCLAT00000008008.1 UniProtKB/TrEMBL
InterPro Kish-B UniProtKB/TrEMBL
  Ksh1 UniProtKB/TrEMBL
NCBI Gene Tmem167b ENTREZGENE
PANTHER PROTEIN KISH-B UniProtKB/TrEMBL
  PTHR46815 UniProtKB/TrEMBL
Pfam DUF1242 UniProtKB/TrEMBL
UniProt A0A8C2V2P2 ENTREZGENE, UniProtKB/TrEMBL