Lamp5 (lysosomal associated membrane protein family member 5) - Rat Genome Database

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Gene: Lamp5 (lysosomal associated membrane protein family member 5) Chinchilla lanigera
Analyze
Symbol: Lamp5
Name: lysosomal associated membrane protein family member 5
RGD ID: 8733166
Description: INVOLVED IN presynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH Alagille syndrome (ortholog); ALAGILLE SYNDROME 1 (ortholog); congenital myasthenic syndrome 18 (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); dendrite membrane (ortholog); early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysosomal-associated membrane protein family, member 5; lysosome-associated membrane glycoprotein 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541519,488,527 - 19,502,640 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541519,488,533 - 19,502,599 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lamp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541519,488,527 - 19,502,640 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541519,488,533 - 19,502,599 (+)NCBIChiLan1.0ChiLan1.0
LAMP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38209,514,590 - 9,530,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl209,514,358 - 9,530,524 (+)EnsemblGRCh38hg38GRCh38
GRCh37209,495,237 - 9,511,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36209,443,271 - 9,459,171 (+)NCBINCBI36Build 36hg18NCBI36
Build 34209,443,270 - 9,459,171NCBI
Celera209,565,283 - 9,581,196 (+)NCBICelera
Cytogenetic Map20p12.2NCBI
HuRef209,446,942 - 9,463,136 (+)NCBIHuRef
CHM1_1209,496,119 - 9,512,324 (+)NCBICHM1_1
T2T-CHM13v2.0209,557,493 - 9,573,427 (+)NCBIT2T-CHM13v2.0
Lamp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392135,893,945 - 135,911,837 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2135,894,159 - 135,911,837 (+)EnsemblGRCm39 Ensembl
GRCm382136,052,025 - 136,069,917 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2136,052,239 - 136,069,917 (+)EnsemblGRCm38mm10GRCm38
MGSCv372135,883,663 - 135,895,653 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362135,749,368 - 135,761,358 (+)NCBIMGSCv36mm8
Celera2137,256,215 - 137,268,204 (+)NCBICelera
Cytogenetic Map2F3NCBI
cM Map267.26NCBI
Lamp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83143,825,197 - 143,837,699 (+)NCBIGRCr8
mRatBN7.23123,372,462 - 123,384,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3123,372,462 - 123,384,952 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3127,272,344 - 127,284,976 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03135,849,326 - 135,861,964 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03133,527,966 - 133,540,604 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03129,012,677 - 129,031,522 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3129,018,592 - 129,031,521 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03135,507,575 - 135,519,611 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43124,126,095 - 124,140,577 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13124,031,667 - 124,046,150 (+)NCBI
Celera3122,103,532 - 122,115,537 (+)NCBICelera
Cytogenetic Map3q36NCBI
LAMP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22110,413,731 - 10,429,484 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12010,410,210 - 10,426,311 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0209,487,971 - 9,503,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1209,489,969 - 9,506,137 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl209,489,849 - 9,506,137 (+)Ensemblpanpan1.1panPan2
LAMP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12412,678,209 - 12,693,847 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2412,678,837 - 12,694,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2412,503,699 - 12,519,030 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02413,091,592 - 13,106,970 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2413,090,626 - 13,112,707 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12412,697,277 - 12,712,659 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02412,796,787 - 12,812,122 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02413,140,965 - 13,156,359 (-)NCBIUU_Cfam_GSD_1.0
Lamp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640161,521,587 - 161,525,562 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364859,952,159 - 9,957,016 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364859,952,975 - 9,964,358 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1718,434,658 - 18,452,927 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11718,434,106 - 18,452,689 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21720,802,370 - 20,820,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LAMP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,602,479 - 28,619,632 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,601,497 - 28,624,572 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607115,950,356 - 15,967,723 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474110,453,982 - 10,468,969 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474110,454,012 - 10,468,662 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022289   ⟹   ENSCLAP00000022084
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541519,488,527 - 19,502,640 (+)Ensembl
RefSeq Acc Id: XM_005380867   ⟹   XP_005380924
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541519,488,533 - 19,502,599 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380924 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022084
  ENSCLAP00000022084.1
Reference Protein Sequences
RefSeq Acc Id: XP_005380924   ⟸   XM_005380867
- UniProtKB: A0A8C2VXY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000022084   ⟸   ENSCLAT00000022289
Protein Domains
Lysosome-associated membrane glycoprotein 2-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015136 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022289 ENTREZGENE
  ENSCLAT00000022289.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.160.110 UniProtKB/TrEMBL
InterPro Lamp2-like_luminal UniProtKB/TrEMBL
  Lysosome-assoc_membr_glycop UniProtKB/TrEMBL
NCBI Gene Lamp5 ENTREZGENE
PANTHER LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 5 UniProtKB/TrEMBL
  PTHR11506 UniProtKB/TrEMBL
Pfam Lamp UniProtKB/TrEMBL
UniProt A0A8C2VXY3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Lamp5  lysosomal associated membrane protein family member 5    lysosomal-associated membrane protein family, member 5  Symbol and/or name change 5135510 APPROVED