Chmp1b (charged multivesicular body protein 1B) - Rat Genome Database

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Gene: Chmp1b (charged multivesicular body protein 1B) Chinchilla lanigera
Analyze
Symbol: Chmp1b
Name: charged multivesicular body protein 1B
RGD ID: 8732285
Description: ENCODES a protein that exhibits identical protein binding (ortholog); MIT domain binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); cell division (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN amphisome membrane (ortholog); autophagosome membrane (ortholog); endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554021,196,912 - 1,199,480 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Chmp1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554021,196,912 - 1,199,480 (-)NCBIChiLan1.0ChiLan1.0
CHMP1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381811,851,413 - 11,854,444 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1811,851,413 - 11,854,444 (+)EnsemblGRCh38hg38GRCh38
GRCh371811,851,412 - 11,854,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361811,841,426 - 11,842,697 (+)NCBINCBI36Build 36hg18NCBI36
Celera1811,729,892 - 11,732,949 (+)NCBICelera
Cytogenetic Map18p11.21NCBI
HuRef1811,805,683 - 11,808,740 (+)NCBIHuRef
CHM1_11811,850,434 - 11,853,491 (+)NCBICHM1_1
T2T-CHM13v2.01812,013,673 - 12,016,702 (+)NCBIT2T-CHM13v2.0
Chmp1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391867,338,430 - 67,340,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1867,338,437 - 67,340,960 (+)EnsemblGRCm39 Ensembl
GRCm381867,205,359 - 67,207,887 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1867,205,366 - 67,207,889 (+)EnsemblGRCm38mm10GRCm38
MGSCv371867,365,013 - 67,367,541 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361867,330,792 - 67,332,370 (+)NCBIMGSCv36mm8
MGSCv361867,543,513 - 67,545,091 (+)NCBIMGSCv36mm8
Cytogenetic Map18E1NCBI
cM Map1839.89NCBI
Chmp1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81863,010,270 - 63,012,800 (+)NCBIGRCr8
mRatBN7.21860,740,349 - 60,742,879 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1862,813,159 - 62,815,686 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01863,511,902 - 63,514,429 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01861,360,955 - 61,363,485 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01862,923,620 - 62,926,150 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01862,110,410 - 62,112,940 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41863,715,066 - 63,717,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1858,848,127 - 58,850,657 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
CHMP1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21726,170,602 - 26,175,519 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11811,863,198 - 11,868,123 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0182,452,393 - 2,455,509 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1184,716,131 - 4,719,173 (-)NCBIpanpan1.1PanPan1.1panPan2
CHMP1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1777,500,378 - 77,503,092 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha776,902,033 - 76,904,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0777,558,134 - 77,560,841 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1777,255,319 - 77,258,026 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0777,301,902 - 77,304,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0777,589,038 - 77,591,744 (+)NCBIUU_Cfam_GSD_1.0
Chmp1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049441,163,626 - 1,166,513 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936626391,942 - 394,440 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHMP1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1697,356,924 - 97,359,613 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2690,689,845 - 90,692,131 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHMP1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11869,534,547 - 69,539,377 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605044,533,784 - 44,536,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chmp1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477019,487,040 - 19,489,740 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005372575   ⟹   XP_005372632
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554021,196,912 - 1,199,480 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005372632 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005372632   ⟸   XM_005372575
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Chmp1b ENTREZGENE