Cd24 (CD24 molecule) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cd24 (CD24 molecule) Chinchilla lanigera
Analyze
Symbol: Cd24
Name: CD24 molecule
RGD ID: 8732119
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); apoptotic nuclear changes (ortholog); apoptotic signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); multiple sclerosis (ortholog); pancreatic cancer (ortholog); FOUND IN anchored component of external side of plasma membrane (ortholog); cell surface (ortholog); ciliary membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: signal transducer CD24
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic mitochondrial changes  (ISO)
apoptotic nuclear changes  (ISO)
apoptotic signaling pathway  (ISO)
B cell receptor transport into membrane raft  (ISO)
cell activation  (ISO)
cell migration  (ISO)
cell surface receptor signaling pathway  (ISO)
chemokine receptor transport out of membrane raft  (ISO)
cholesterol homeostasis  (ISO)
glomerular parietal epithelial cell differentiation  (ISO)
glomerular visceral epithelial cell differentiation  (ISO)
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  (ISO)
homotypic cell-cell adhesion  (ISO)
immune response  (ISO)
leukocyte cell-cell adhesion  (ISO)
leukocyte migration involved in inflammatory response  (ISO)
negative regulation of B cell proliferation  (ISO)
negative regulation of erythrocyte aggregation  (ISO)
negative regulation of erythrocyte clearance  (ISO)
negative regulation of inflammatory response to wounding  (ISO)
negative regulation of interleukin-6 production  (ISO)
negative regulation of monocyte chemotactic protein-1 production  (ISO)
negative regulation of neuroblast proliferation  (ISO)
negative regulation of neurogenesis  (ISO)
negative regulation of neuron differentiation  (ISO)
negative regulation of T cell homeostatic proliferation  (ISO)
negative regulation of transforming growth factor beta3 production  (ISO)
negative regulation of tumor necrosis factor production  (ISO)
neuromuscular synaptic transmission  (ISO)
neuron projection development  (ISO)
positive regulation of activated T cell proliferation  (ISO)
positive regulation of alpha-beta T cell proliferation  (ISO)
positive regulation of B cell apoptotic process  (ISO)
positive regulation of calcium-mediated signaling  (ISO)
positive regulation of cell adhesion mediated by integrin  (ISO)
positive regulation of cell-cell adhesion  (ISO)
positive regulation of cell-cell adhesion mediated by integrin  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of inflammatory response to antigenic stimulus  (ISO)
positive regulation of inflammatory response to wounding  (ISO)
positive regulation of integrin activation  (ISO)
positive regulation of MAP kinase activity  (ISO)
positive regulation of nephron tubule epithelial cell differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of T cell homeostatic proliferation  (ISO)
positive regulation of T cell mediated immune response to tumor cell  (ISO)
pre-B cell differentiation  (ISO)
regulation of B cell differentiation  (ISO)
regulation of cell-cell adhesion  (ISO)
regulation of cell-cell adhesion mediated by integrin  (ISO)
regulation of cytokine-mediated signaling pathway  (ISO)
regulation of MAPK cascade  (ISO)
regulation of phosphorylation  (ISO)
respiratory burst  (ISO)
response to estrogen  (ISO)
response to hypoxia  (ISO)
response to molecule of bacterial origin  (ISO)
synaptic vesicle endocytosis  (ISO)
T cell costimulation  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Cd24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBIChiLan1.0ChiLan1.0
CD24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6106,969,831 - 106,975,627 (-)EnsemblGRCh38hg38GRCh38
GRCh386106,969,831 - 106,976,855 (-)NCBIGRCh38GRCh38hg38GRCh38
Build 36621,152,527 - 21,154,705NCBINCBI36hg18NCBI36
Build 34Y19,540,683 - 19,542,776NCBI
CeleraY6,620,552 - 6,622,554 (+)NCBI
Cytogenetic Map6q21NCBI
HuRef6104,864,115 - 104,868,879 (-)NCBIHuRef
Cd24a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,454,433 - 43,460,261 (+)NCBIGRCm39mm39
GRCm39 Ensembl1043,454,280 - 43,460,261 (+)Ensembl
GRCm381043,579,169 - 43,584,265 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,578,284 - 43,584,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv371043,298,975 - 43,304,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv361043,267,584 - 43,272,680 (+)NCBImm8
Celera1044,451,209 - 44,456,305 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.01NCBI
Cd24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22047,074,353 - 47,079,662 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2047,073,512 - 47,079,662 (+)Ensembl
Rnor_6.02048,335,540 - 48,340,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,335,540 - 48,340,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,989,320 - 49,994,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,502,354 - 47,507,663 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12047,531,055 - 47,536,352 (+)NCBI
Celera2052,908,730 - 52,914,027 (-)NCBICelera
RH 3.4 Map20495.52RGD
RH 3.4 Map20493.45RGD
Cytogenetic Map20q13NCBI
CD24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11535,991,289 - 35,993,436 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,655,624 - 108,657,847 (-)NCBIpanpan1.1panPan2
Mhudiblu_PPA_v06104,783,720 - 104,789,509 (-)NCBIMhudiblu_PPA_v0panPan3
CD24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,239,957 - 64,245,114 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,026,788 - 64,032,059 (-)NCBI
ROS_Cfam_1.01265,083,676 - 65,088,953 (-)NCBI
UMICH_Zoey_3.11264,443,727 - 64,448,980 (-)NCBI
UNSW_CanFamBas_1.01264,287,882 - 64,293,144 (-)NCBI
UU_Cfam_GSD_1.01264,561,114 - 64,566,403 (-)NCBI
LOC101968601
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629211,864,267 - 11,864,552 (-)NCBI
SpeTri2.0NW_00493649116,706,745 - 16,707,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100519934
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1173,119,758 - 73,124,368 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,267,687 - 82,273,306 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,863,164 - 66,868,951 (+)NCBI
Vero_WHO_p1.0NW_02366604039,191,025 - 39,196,629 (+)NCBI
Cd24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478015,287,426 - 15,292,292 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017102   ⟹   ENSCLAP00000016936
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)Ensembl
RefSeq Acc Id: XM_005377835   ⟹   XP_005377892
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377892 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005377892   ⟸   XM_005377835
- Sequence:
RefSeq Acc Id: ENSCLAP00000016936   ⟸   ENSCLAT00000017102


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011622 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016936 ENTREZGENE
Ensembl Transcript ENSCLAT00000017102 ENTREZGENE
NCBI Gene LOC102008202 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Cd24  CD24 molecule  LOC102008202  signal transducer CD24-like  Symbol and/or name change 5135510 APPROVED