Cd24 (CD24 molecule) - Rat Genome Database

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Gene: Cd24 (CD24 molecule) Chinchilla lanigera
Analyze
Symbol: Cd24
Name: CD24 molecule
RGD ID: 8732119
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); apoptotic nuclear changes (ortholog); apoptotic signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); multiple sclerosis (ortholog); pancreatic cancer (ortholog); FOUND IN cell surface (ortholog); ciliary membrane (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal transducer CD24
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic mitochondrial changes  (ISO)
apoptotic nuclear changes  (ISO)
apoptotic signaling pathway  (ISO)
B cell apoptotic process  (ISO)
B cell proliferation  (ISO)
B cell receptor transport into membrane raft  (ISO)
calcium-mediated signaling  (ISO)
CD4-positive, alpha-beta T cell proliferation  (ISO)
cell activation  (ISO)
cell migration  (ISO)
cell surface receptor signaling pathway  (ISO)
chemokine receptor transport out of membrane raft  (ISO)
cholesterol homeostasis  (ISO)
glomerular parietal epithelial cell differentiation  (ISO)
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  (ISO)
homotypic cell-cell adhesion  (ISO)
immune response  (ISO)
integrin activation  (ISO)
leukocyte cell-cell adhesion  (ISO)
leukocyte migration involved in inflammatory response  (ISO)
negative regulation of B cell proliferation  (ISO)
negative regulation of erythrocyte aggregation  (ISO)
negative regulation of erythrocyte clearance  (ISO)
negative regulation of inflammatory response to wounding  (ISO)
negative regulation of interleukin-6 production  (ISO)
negative regulation of monocyte chemotactic protein-1 production  (ISO)
negative regulation of neuroblast proliferation  (ISO)
negative regulation of neurogenesis  (ISO)
negative regulation of neuron differentiation  (ISO)
negative regulation of T cell homeostatic proliferation  (ISO)
negative regulation of transforming growth factor beta3 production  (ISO)
negative regulation of tumor necrosis factor production  (ISO)
neuroblast proliferation  (ISO)
neuromuscular synaptic transmission  (ISO)
neuron projection development  (ISO)
peptidyl-tyrosine phosphorylation  (ISO)
podocyte differentiation  (ISO)
positive regulation of activated T cell proliferation  (ISO)
positive regulation of alpha-beta T cell proliferation  (ISO)
positive regulation of B cell apoptotic process  (ISO)
positive regulation of calcium-mediated signaling  (ISO)
positive regulation of CD4-positive, alpha-beta T cell proliferation  (ISO)
positive regulation of cell adhesion mediated by integrin  (ISO)
positive regulation of cell-cell adhesion  (ISO)
positive regulation of cell-cell adhesion mediated by integrin  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of inflammatory response to antigenic stimulus  (ISO)
positive regulation of inflammatory response to wounding  (ISO)
positive regulation of integrin activation  (ISO)
positive regulation of MAP kinase activity  (ISO)
positive regulation of nephron tubule epithelial cell differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of peptidyl-tyrosine phosphorylation  (ISO)
positive regulation of T cell homeostatic proliferation  (ISO)
positive regulation of T cell mediated immune response to tumor cell  (ISO)
pre-B cell differentiation  (ISO)
regulation of B cell differentiation  (ISO)
regulation of cell-cell adhesion  (ISO)
regulation of cell-cell adhesion mediated by integrin  (ISO)
regulation of cytokine-mediated signaling pathway  (ISO)
regulation of MAPK cascade  (ISO)
regulation of phosphorylation  (ISO)
respiratory burst  (ISO)
response to estrogen  (ISO)
response to hypoxia  (ISO)
response to molecule of bacterial origin  (ISO)
synaptic vesicle endocytosis  (ISO)
T cell costimulation  (ISO)
T cell homeostatic proliferation  (ISO)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBIChiLan1.0ChiLan1.0
CD24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386106,969,831 - 106,976,855 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6106,969,831 - 106,975,627 (-)EnsemblGRCh38hg38GRCh38
GRCh37619,611,914 - 19,614,093 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36621,152,527 - 21,154,705NCBINCBI36Build 36hg18NCBI36
Build 34Y19,540,683 - 19,542,776NCBI
CeleraY6,620,552 - 6,622,554 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6104,864,115 - 104,868,879 (-)NCBIHuRef
T2T-CHM13v2.06108,145,896 - 108,152,920 (-)NCBIT2T-CHM13v2.0
Cd24a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,454,433 - 43,460,261 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1043,454,280 - 43,460,261 (+)EnsemblGRCm39 Ensembl
GRCm381043,579,169 - 43,584,265 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,578,284 - 43,584,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv371043,298,975 - 43,304,071 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361043,267,584 - 43,272,680 (+)NCBIMGSCv36mm8
Celera1044,451,209 - 44,456,305 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1023.01NCBI
Cd24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,655,549 - 48,661,786 (+)NCBIGRCr8
mRatBN7.22047,074,353 - 47,079,662 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2047,073,512 - 47,079,662 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,789,167 - 48,794,459 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,439,001 - 48,444,293 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02049,123,655 - 49,128,973 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02048,335,540 - 48,340,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2048,335,540 - 48,340,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,989,320 - 49,994,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,502,354 - 47,507,663 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12047,531,055 - 47,536,352 (+)NCBI
Celera2052,908,730 - 52,914,027 (-)NCBICelera
RH 3.4 Map20495.52RGD
RH 3.4 Map20493.45RGD
Cytogenetic Map20q13NCBI
LOC100982539
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25126,990,812 - 126,994,802 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16124,877,952 - 124,882,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06104,783,720 - 104,789,509 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11535,991,289 - 35,993,436 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,655,624 - 108,657,847 (-)NCBIpanpan1.1panPan2
CD24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,239,957 - 64,245,114 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,026,788 - 64,032,059 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01265,083,676 - 65,088,953 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11264,443,727 - 64,448,980 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01264,287,882 - 64,293,144 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01264,561,114 - 64,566,403 (-)NCBIUU_Cfam_GSD_1.0
LOC101968601
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629211,864,267 - 11,864,552 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493649116,706,745 - 16,707,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100519934
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1173,119,758 - 73,124,368 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,267,687 - 82,273,306 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,863,164 - 66,868,951 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604039,191,025 - 39,196,629 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478015,287,433 - 15,292,292 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478015,287,426 - 15,292,292 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017102   ⟹   ENSCLAP00000016936
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541132,270,881 - 32,275,236 (-)Ensembl
RefSeq Acc Id: XM_005377835   ⟹   XP_005377892
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541132,270,881 - 32,275,236 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377892 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016936
  ENSCLAP00000016936.1
RefSeq Acc Id: XP_005377892   ⟸   XM_005377835
- UniProtKB: A0A8C2YR10 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000016936   ⟸   ENSCLAT00000017102


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011622 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017102 ENTREZGENE
  ENSCLAT00000017102.1 UniProtKB/TrEMBL
InterPro CD24 UniProtKB/TrEMBL
NCBI Gene LOC102008202 ENTREZGENE
PANTHER PTHR16676 UniProtKB/TrEMBL
  SIGNAL TRANSDUCER CD24 UniProtKB/TrEMBL
Pfam CD24 UniProtKB/TrEMBL
UniProt A0A8C2YR10 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Cd24  CD24 molecule  LOC102008202  signal transducer CD24-like  Symbol and/or name change 5135510 APPROVED