Ofd1 (OFD1 centriole and centriolar satellite protein) - Rat Genome Database

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Gene: Ofd1 (OFD1 centriole and centriolar satellite protein) Chinchilla lanigera
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Symbol: Ofd1
Name: OFD1 centriole and centriolar satellite protein
RGD ID: 8731795
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); gamma-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN axoneme assembly (ortholog); centriole replication (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CAKUT (ortholog); fundus dystrophy (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: oral-facial-digital syndrome 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,433,855 - 4,471,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,433,747 - 4,470,842 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Ofd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,433,855 - 4,471,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,433,747 - 4,470,842 (-)NCBIChiLan1.0ChiLan1.0
OFD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX13,734,743 - 13,777,955 (+)EnsemblGRCh38hg38GRCh38
GRCh38X13,734,726 - 13,773,978 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X13,752,867 - 13,787,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,662,801 - 13,697,393 (+)NCBINCBI36hg18NCBI36
Build 34X13,512,536 - 13,547,127NCBI
CeleraX17,869,913 - 17,904,562 (+)NCBI
Cytogenetic MapXp22.2NCBI
HuRefX11,510,937 - 11,544,940 (+)NCBIHuRef
CHM1_1X13,783,650 - 13,818,298 (+)NCBICHM1_1
Ofd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,171,503 - 165,223,700 (-)NCBIGRCm39mm39
GRCm39 EnsemblX165,173,029 - 165,223,700 (-)Ensembl
GRCm38X166,386,573 - 166,440,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,390,033 - 166,440,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X162,827,965 - 162,878,636 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X161,735,041 - 161,784,660 (-)NCBImm8
CeleraX149,569,705 - 149,620,495 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX77.28NCBI
Ofd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X28,015,347 - 28,056,115 (+)NCBImRatBN7.2
Rnor_6.0 EnsemblX29,562,165 - 29,602,925 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X29,562,165 - 29,602,934 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X29,955,456 - 29,996,224 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,701,675 - 48,742,443 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX28,388,104 - 28,428,825 (+)NCBICelera
Cytogenetic MapXq13NCBI
OFD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X13,630,006 - 13,669,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,611,304 - 13,664,512 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X6,296,597 - 6,376,197 (+)NCBIMhudiblu_PPA_v0panPan3
OFD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X10,140,439 - 10,194,478 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX10,140,067 - 10,194,472 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX10,114,679 - 10,168,786 (+)NCBI
ROS_Cfam_1.0X10,098,262 - 10,152,653 (+)NCBI
UMICH_Zoey_3.1X10,166,885 - 10,220,990 (+)NCBI
UNSW_CanFamBas_1.0X10,158,225 - 10,212,581 (+)NCBI
UU_Cfam_GSD_1.0X10,184,578 - 10,238,702 (+)NCBI
Ofd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X3,292,935 - 3,331,915 (+)NCBI
SpeTri2.0NW_0049364703,292,961 - 3,331,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OFD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X10,361,403 - 10,415,502 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,314,606 - 11,369,244 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OFD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,222,396 - 12,256,802 (+)NCBI
ChlSab1.1 EnsemblX12,222,760 - 12,256,557 (+)Ensembl
Vero_WHO_p1.0NW_02366605614,039,780 - 14,076,648 (+)NCBI
Ofd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624882376,447 - 417,066 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003447   ⟹   ENSCLAP00000003379
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555194,433,855 - 4,471,070 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003448   ⟹   ENSCLAP00000003380
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555194,433,855 - 4,471,070 (-)Ensembl
RefSeq Acc Id: XM_005409202   ⟹   XP_005409259
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555194,433,747 - 4,470,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506984   ⟹   XP_013362438
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555194,433,747 - 4,470,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506985   ⟹   XP_013362439
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555194,433,747 - 4,470,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506986   ⟹   XP_013362440
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555194,433,747 - 4,470,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506987   ⟹   XP_013362441
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555194,433,747 - 4,470,272 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506988   ⟹   XP_013362442
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555194,433,747 - 4,467,192 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506989   ⟹   XP_013362443
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555194,440,144 - 4,470,842 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005409259   ⟸   XM_005409202
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013362439   ⟸   XM_013506985
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362440   ⟸   XM_013506986
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013362438   ⟸   XM_013506984
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013362441   ⟸   XM_013506987
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013362442   ⟸   XM_013506988
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013362443   ⟸   XM_013506989
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSCLAP00000003379   ⟸   ENSCLAT00000003447
RefSeq Acc Id: ENSCLAP00000003380   ⟸   ENSCLAT00000003448


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002419 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003380 ENTREZGENE
Ensembl Transcript ENSCLAT00000003448 ENTREZGENE
NCBI Gene Ofd1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Ofd1  OFD1 centriole and centriolar satellite protein    OFD1, centriole and centriolar satellite protein  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ofd1  OFD1, centriole and centriolar satellite protein    oral-facial-digital syndrome 1  Symbol and/or name change 5135510 APPROVED