Aplnr (apelin receptor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Aplnr (apelin receptor) Chinchilla lanigera
Analyze
Symbol: Aplnr
Name: apelin receptor
RGD ID: 8731544
Description: INVOLVED IN adult heart development (ortholog); aorta development (ortholog); atrioventricular valve development (ortholog); PARTICIPATES IN apelin signaling pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555112,322,920 - 2,324,068 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555112,321,445 - 2,324,417 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Aplnr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555112,322,920 - 2,324,068 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555112,321,445 - 2,324,417 (-)NCBIChiLan1.0ChiLan1.0
APLNR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,233,591 - 57,237,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,233,577 - 57,237,250 (-)EnsemblGRCh38hg38GRCh38
GRCh371157,001,065 - 57,004,724 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,757,643 - 56,761,489 (-)NCBINCBI36Build 36hg18NCBI36
Build 341156,757,629 - 56,761,364NCBI
Celera1154,360,003 - 54,363,879 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,349,884 - 53,353,760 (-)NCBIHuRef
CHM1_11156,867,161 - 56,871,037 (-)NCBICHM1_1
T2T-CHM13v2.01157,183,042 - 57,186,701 (-)NCBIT2T-CHM13v2.0
Aplnr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,966,704 - 84,970,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,966,569 - 84,970,267 (+)EnsemblGRCm39 Ensembl
GRCm38285,136,360 - 85,139,923 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl285,136,225 - 85,139,923 (+)EnsemblGRCm38mm10GRCm38
MGSCv37284,976,517 - 84,980,080 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,937,239 - 84,940,762 (+)NCBIMGSCv36mm8
Celera286,724,848 - 86,728,415 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Aplnr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,624,055 - 90,627,700 (+)NCBIGRCr8
mRatBN7.2370,217,407 - 70,221,052 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl370,217,385 - 70,221,050 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,599,092 - 73,602,742 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0382,197,771 - 82,201,425 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,962,920 - 79,966,570 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,540,538 - 72,544,183 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,540,538 - 72,544,182 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0379,052,120 - 79,055,765 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4368,365,637 - 68,369,282 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1368,262,008 - 68,265,653 (+)NCBI
Celera369,568,426 - 69,572,071 (+)NCBICelera
Cytogenetic Map3q24NCBI
APLNR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,390,693 - 58,394,694 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,409,548 - 59,411,613 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,475,088 - 52,479,102 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13159,965,089 - 159,968,944 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3159,967,360 - 159,968,502 (-)Ensemblpanpan1.1panPan2
APLNR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,878,621 - 38,882,280 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,878,947 - 38,886,206 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,423,440 - 38,427,189 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,559,840 - 39,563,591 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11839,141,690 - 39,145,439 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,715,653 - 38,719,404 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,346,074 - 39,349,830 (+)NCBIUU_Cfam_GSD_1.0
Aplnr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494715,117,132 - 15,120,749 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365815,231,242 - 5,232,384 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365815,230,836 - 5,234,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APLNR
(Sus scrofa - pig)		 No map positions available.
APLNR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,007,092 - 16,011,868 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,008,300 - 16,009,601 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038113,347,578 - 113,351,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aplnr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,308,794 - 3,309,939 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,308,548 - 3,311,431 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025851   ⟹   ENSCLAP00000025579
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555112,322,920 - 2,324,068 (-)Ensembl
RefSeq Acc Id: XM_005407987   ⟹   XP_005408044
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555112,321,445 - 2,324,417 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025579
  ENSCLAP00000025579.1
Reference Protein Sequences
RefSeq Acc Id: XP_005408044   ⟸   XM_005407987
- UniProtKB: A0A8C2YV51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025579   ⟸   ENSCLAT00000025851
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017677 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025851 ENTREZGENE
  ENSCLAT00000025851.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Apelin_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
NCBI Gene Aplnr ENTREZGENE
PANTHER APELIN RECEPTOR UniProtKB/TrEMBL
  CELL ADHESION MOLECULE UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS APJRECEPTOR UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C2YV51 ENTREZGENE, UniProtKB/TrEMBL