Sftpb (surfactant protein B) - Rat Genome Database

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Gene: Sftpb (surfactant protein B) Chinchilla lanigera
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Symbol: Sftpb
Name: surfactant protein B
RGD ID: 8731185
Description: INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to nitric oxide (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); asthma (ortholog); bacterial pneumonia (ortholog); FOUND IN alveolar lamellar body (ortholog); cytoplasm (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: pulmonary surfactant-associated protein B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,849,314 - 1,858,087 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,849,313 - 1,858,087 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Sftpb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,849,314 - 1,858,087 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,849,313 - 1,858,087 (+)NCBIChiLan1.0ChiLan1.0
SFTPB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl285,657,314 - 85,668,741 (-)EnsemblGRCh38hg38GRCh38
GRCh38285,657,307 - 85,668,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37285,884,430 - 85,895,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,737,951 - 85,748,823 (-)NCBINCBI36hg18NCBI36
Build 34285,796,098 - 85,806,970NCBI
Celera285,712,739 - 85,724,163 (-)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,781,765 - 85,793,199 (-)NCBIHuRef
CHM1_1285,814,217 - 85,825,673 (-)NCBICHM1_1
Sftpb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,281,594 - 72,291,356 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,281,594 - 72,291,354 (+)Ensembl
GRCm38672,304,610 - 72,314,373 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,304,610 - 72,314,371 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,253,239 - 72,264,364 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,232,754 - 72,243,879 (+)NCBImm8
Celera674,392,942 - 74,404,491 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Sftpb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,359,303 - 104,368,439 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl4100,166,863 - 100,175,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04100,166,855 - 100,175,941 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04164,937,638 - 164,946,703 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,609,410 - 105,618,452 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14105,853,890 - 105,862,933 (+)NCBI
Celera493,513,449 - 93,522,486 (+)NCBICelera
RH 3.4 Map4631.95RGD
Cytogenetic Map4q31NCBI
SFTPB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,257,244 - 87,268,332 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,257,244 - 87,268,332 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,708,485 - 85,718,120 (-)NCBIMhudiblu_PPA_v0panPan3
SFTPB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,419,305 - 39,428,513 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,386,584 - 39,426,229 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,091,243 - 39,100,877 (+)NCBI
ROS_Cfam_1.01740,165,986 - 40,175,651 (+)NCBI
UMICH_Zoey_3.11739,295,537 - 39,305,192 (+)NCBI
UNSW_CanFamBas_1.01739,368,057 - 39,377,708 (+)NCBI
UU_Cfam_GSD_1.01739,767,452 - 39,777,111 (+)NCBI
Sftpb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,235,909 - 79,243,514 (-)NCBI
SpeTri2.0NW_0049367121,614,979 - 1,621,207 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFTPB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,101,952 - 59,111,834 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,101,940 - 59,113,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2361,901,846 - 61,913,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SFTPB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,487,424 - 21,497,491 (+)NCBI
ChlSab1.1 Ensembl1421,488,387 - 21,499,850 (+)Ensembl
Vero_WHO_p1.0NW_02366604590,974,475 - 90,981,286 (-)NCBI
Sftpb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,486,483 - 17,495,822 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009441   ⟹   ENSCLAP00000009312
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554241,849,314 - 1,858,087 (+)Ensembl
RefSeq Acc Id: XM_005385414   ⟹   XP_005385471
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554241,849,314 - 1,858,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005385415   ⟹   XP_005385472
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554241,849,313 - 1,858,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005385416   ⟹   XP_005385473
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554241,849,314 - 1,858,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005385417   ⟹   XP_005385474
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554241,849,313 - 1,856,300 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385471 (Get FASTA)   NCBI Sequence Viewer  
  XP_005385472 (Get FASTA)   NCBI Sequence Viewer  
  XP_005385473 (Get FASTA)   NCBI Sequence Viewer  
  XP_005385474 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005385472   ⟸   XM_005385415
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005385474   ⟸   XM_005385417
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005385471   ⟸   XM_005385414
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005385473   ⟸   XM_005385416
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000009312   ⟸   ENSCLAT00000009441


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006471 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009312 ENTREZGENE
Ensembl Transcript ENSCLAT00000009441 ENTREZGENE
NCBI Gene Sftpb ENTREZGENE