Tnfsf13b (TNF superfamily member 13b) - Rat Genome Database

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Gene: Tnfsf13b (TNF superfamily member 13b) Chinchilla lanigera
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Symbol: Tnfsf13b
Name: TNF superfamily member 13b
RGD ID: 8730423
Description: INVOLVED IN B cell costimulation (ortholog); B cell differentiation (ortholog); B cell homeostasis (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Chronic Hepatitis B (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor (ligand) superfamily, member 13b; tumor necrosis factor ligand superfamily member 13B; tumor necrosis factor superfamily member 13b
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554043,536,868 - 3,569,750 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554043,536,041 - 3,573,242 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Tnfsf13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554043,536,868 - 3,569,750 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554043,536,041 - 3,573,242 (-)NCBIChiLan1.0ChiLan1.0
TNFSF13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813108,269,629 - 108,308,484 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13108,251,240 - 108,308,484 (+)EnsemblGRCh38hg38GRCh38
GRCh3713108,921,977 - 108,960,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613107,719,978 - 107,757,366 (+)NCBINCBI36hg18NCBI36
Build 3413107,719,977 - 107,757,366NCBI
Celera1389,766,721 - 89,804,112 (+)NCBI
Cytogenetic Map13q33.3NCBI
HuRef1389,512,942 - 89,552,797 (+)NCBIHuRef
CHM1_113108,891,226 - 108,925,602 (+)NCBICHM1_1
T2T-CHM13v2.013107,496,022 - 107,535,489 (+)NCBI
Tnfsf13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39810,056,229 - 10,086,000 (+)NCBIGRCm39mm39
GRCm39 Ensembl810,056,467 - 10,089,072 (+)Ensembl
GRCm38810,006,229 - 10,036,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl810,006,467 - 10,039,072 (+)EnsemblGRCm38mm10GRCm38
MGSCv37810,006,633 - 10,036,000 (+)NCBIGRCm37mm9NCBIm37
MGSCv36810,006,605 - 10,035,972 (+)NCBImm8
Celera810,182,059 - 10,211,354 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map84.55NCBI
Tnfsf13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21679,462,406 - 79,492,888 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1679,462,402 - 79,492,693 (-)Ensembl
Rnor_6.01685,275,690 - 85,306,419 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1685,275,678 - 85,306,366 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01684,714,936 - 84,745,392 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41684,837,266 - 84,856,103 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1677,261,395 - 77,279,849 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
TNFSF13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113108,536,617 - 108,575,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13108,536,617 - 108,574,296 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01389,399,044 - 89,438,837 (+)NCBIMhudiblu_PPA_v0panPan3
TNFSF13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12257,036,307 - 57,069,053 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2257,036,292 - 57,068,320 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2256,808,400 - 56,840,043 (+)NCBI
ROS_Cfam_1.02257,557,150 - 57,589,282 (+)NCBI
ROS_Cfam_1.0 Ensembl2257,557,147 - 57,589,110 (+)Ensembl
UMICH_Zoey_3.12257,158,662 - 57,190,034 (+)NCBI
UNSW_CanFamBas_1.02257,146,582 - 57,177,958 (+)NCBI
UU_Cfam_GSD_1.02257,184,020 - 57,215,438 (+)NCBI
Tnfsf13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945192,116,853 - 192,164,060 (+)NCBI
SpeTri2.0NW_0049364723,789,111 - 3,834,163 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFSF13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1175,599,598 - 75,633,041 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11175,599,296 - 75,633,044 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21183,014,191 - 83,048,071 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFSF13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1386,637,988 - 86,675,774 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl386,638,302 - 86,675,772 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604643,297,800 - 43,335,384 (+)NCBIVero_WHO_p1.0
Tnfsf13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247933,629,425 - 3,664,258 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003993   ⟹   ENSCLAP00000003917
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554043,536,868 - 3,569,750 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003994   ⟹   ENSCLAP00000003918
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554043,536,868 - 3,569,750 (-)Ensembl
RefSeq Acc Id: XM_005374008   ⟹   XP_005374065
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554043,536,041 - 3,573,242 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374065 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374065   ⟸   XM_005374008
- Sequence:
RefSeq Acc Id: ENSCLAP00000003917   ⟸   ENSCLAT00000003993
RefSeq Acc Id: ENSCLAP00000003918   ⟸   ENSCLAT00000003994
Protein Domains
TNF_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002786 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000003917 ENTREZGENE
  ENSCLAP00000003917.1 UniProtKB/TrEMBL
  ENSCLAP00000003918.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003993 ENTREZGENE
  ENSCLAT00000003993.1 UniProtKB/TrEMBL
  ENSCLAT00000003994.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro TNF_dom UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene Tnfsf13b ENTREZGENE
Pfam TNF UniProtKB/TrEMBL
PROSITE TNF_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A8C2US30_CHILA UniProtKB/TrEMBL
  A0A8C2UUL5_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-08 Tnfsf13b  TNF superfamily member 13b    tumor necrosis factor superfamily member 13b  Symbol and/or name change 5135510 APPROVED
2016-08-16 Tnfsf13b  tumor necrosis factor superfamily member 13b    tumor necrosis factor (ligand) superfamily, member 13b  Symbol and/or name change 5135510 APPROVED