Znf346 (zinc finger protein 346) - Rat Genome Database

Name: Znf346
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Znf346 (zinc finger protein 346) Chinchilla lanigera

Analyze

Symbol:

Znf346

Name:

zinc finger protein 346

RGD ID:

8730301

Description:

ENCODES a protein that exhibits double-stranded RNA binding (ortholog); enzyme binding (ortholog); miRNA binding (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,312,274 - 29,349,316 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	29,312,273 - 29,346,983 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 5, Trisomy 5q (ISO)

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

genetic disease (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Sotos syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of apoptotic process (ISO)

Cellular Component

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

double-stranded RNA binding (ISO)

enzyme binding (ISO)

miRNA binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Znf346
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,312,274 - 29,349,316 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	29,312,273 - 29,346,983 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF346
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	177,022,696 - 177,081,189 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	177,022,696 - 177,081,189 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	176,449,697 - 176,508,190 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	176,382,303 - 176,426,364 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	176,382,302 - 176,426,349	NCBI
Celera	5	172,007,563 - 172,051,635 (-)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	171,371,845 - 171,415,482 (+)	NCBI		HuRef
CHM1_1	5	175,882,099 - 175,926,642 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	177,565,869 - 177,624,397 (+)	NCBI		T2T-CHM13v2.0

Zfp346
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	55,253,079 - 55,282,884 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	55,253,124 - 55,282,638 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	55,105,271 - 55,135,071 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	55,105,311 - 55,134,825 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	55,206,670 - 55,236,432 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	55,114,933 - 55,144,438 (+)	NCBI		MGSCv36	mm8
Celera	13	56,166,301 - 56,196,016 (+)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	29.8	NCBI

Zfp346
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,498,933 - 9,528,824 (-)	NCBI		GRCr8
mRatBN7.2	17	9,493,787 - 9,523,681 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,493,803 - 9,523,635 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	9,510,640 - 9,541,007 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	11,039,927 - 11,069,987 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,507,045 - 9,537,410 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	10,021,596 - 10,061,803 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,021,420 - 10,061,772 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	12,130,909 - 12,168,917 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	15,544,785 - 15,575,512 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	15,547,045 - 15,575,515 (-)	NCBI
Celera	17	9,571,731 - 9,601,487 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

ZNF346
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	172,104,227 - 172,165,684 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	170,243,769 - 170,307,038 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	172,321,875 - 172,386,462 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	179,390,239 - 179,449,071 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,390,239 - 179,449,071 (+)	Ensembl	panpan1.1		panPan2

ZNF346
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	36,269,126 - 36,303,647 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	36,271,853 - 36,303,594 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	36,235,147 - 36,269,673 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	36,633,379 - 36,667,914 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	36,633,413 - 36,667,875 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	36,460,298 - 36,494,813 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	36,647,499 - 36,682,090 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	37,155,749 - 37,190,501 (-)	NCBI		UU_Cfam_GSD_1.0

Znf346
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	122,286,077 - 122,338,890 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	1,310,999 - 1,366,227 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	1,311,007 - 1,363,731 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF346
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,871,595 - 80,895,585 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	80,871,576 - 80,895,592 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	82,445,038 - 82,469,063 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF346
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,010,203 - 79,072,063 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	79,027,548 - 79,070,705 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	10,173,143 - 10,236,987 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf346
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	12,995,358 - 13,068,150 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	12,997,728 - 13,057,640 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005376407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005376408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005376409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013509701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01008751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01033091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01151211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024010 ⟹ ENSCLAP00000023784

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955408	29,312,274 - 29,349,316 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000024011 ⟹ ENSCLAP00000023785

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955408	29,312,341 - 29,345,923 (+)	Ensembl

RefSeq Acc Id:

XM_005376407 ⟹ XP_005376464

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	29,312,274 - 29,346,983 (+)	NCBI

Sequence:

show sequence

GCCCCTCAACATCTCGCGATACCAAGGCGCAGGAGCAGCTTTCCACCGACGTGGGCTTGCGGGA
AAGATGGAGTATCCTGCGTTGGGCGCTGTGGATGCTGCGGATGGCGGAAGGGCCGGGCCATACA
AAGGCTCGGGAGAGCGGGAGGGCGGGGAACCGGACGGGGTCCGCTTCGACCGCGAGAGGGCGCG
CCGCCTGTGGGAAGCAGTGTCCAGTACTCAGCCAGTGGGGAGGGAGGAAGTGGAGCACATGATC
CAGAAGAATCAGTGTCTCTTCACCGACACCCAGTGTAAGGTTTGCTGTGCCTTGCTGATTTCTG
AGTCCCAGAAGCTGGCACATTACCAGAGCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGC
AATCCATGGACTGGAGACATTAAAGGGGGAAACGAAGAGGCTAGACTCAGATCAGAAGAGCAGC
AGAAGCAAAGACAAGAACCAGTGCTGCCCCATCTGTAACATGACCTTTTCCTCCCCTGTTGTGG
CCCAGTCGCATTACCTGGGGAAGACCCACGCAAAGAACTTAAAGCTGAAGCAGCAATCCACTAA
GGTGGAAGCCTTGCACCAGAATAGAGAGATGATAGACCCAGACAAGTTCTGCAGCCTCTGCCAT
GCAACTTTCAATGACCCCGTTATGGCTCAGCAGCATTATGTGGGCAAAAAACACAGGAAGCAGG
AGACCAAGCTCAAACTCATGGCACACTACGGACGACTAGCAGACCCTGCTGTCACTGACATATC
AGCTGGGAAGGGCTACCCCTGCAAGACGTGTAAGATAGTGCTGAACTCCATAGAACAGTACCAG
GCTCACATCAGTGGCTTCAAGCACAAGAACCAGTCACCAAAAACAGCAGTATCACCCTTGGGCC
AGATTCCAGTGCAGAATCAACTCATTCAGAAAGACTCCAGCACCTTGGAAGACTGAAGGTGTCT
CTGTCCAGCAGCTCATGTAGGACCAGCCATGAGTCAGCTTCCTGTGACTGTAGCCTGAGCCTGT
CATTGGCCGAGGCAAATCCCCTCCTGCTGTTCCCTGTGCTGTGGGCCCTGCAGGTCGTTACAGG
GAGGCAGGGGGATTGAGAGGATGGGAGTAGTAGTTGGAGAATGGCCTGCCTCCTTCTCCAGCCC
CTCTGGGCTACATGTTCTGTGGCCCCAGTGCCTGTTTTCCTCTCCAGGTCAGTTTTGTGCAAAA
ACTGCAGCTGAGGACCAGAATTGCCCCAGGGCTCCAAGTATCTCCTGTGGAAGCTGGAACTTCA
TGCAGACTTTGCCAAGGAAGGAAATAGTAGATGGAAGTAGCTACCACATGGGAGATCGAGCTTA
CATCACACTCCCTCACCCTCCGGAAAGTACGGGCTTTCCTGAGCCTTAGACCAGATGCTGGCCG
GTTGTACAGTTCTTCTAACTGTGATGTGCACAGTTCTGGCAGAGCATTCCTGTCCCTCCTGCCA
TCACCACGGTCCCTGAATGGTGCTAAGGATCTGTAACAGCTAAGGACAAACTGGAGCTGGAAGA
GGCCTCGATGCCCAGTAAGATCCTAGGAAGCCCCAGTGGGGACCTTGCCCCTCCTCCATCAGAG
GTGCTCTGGCCCAGGGTCATGTGGGAAGGTCCCCCACCTGCCACTTTCTTTATGGTTCTATGCC
CTTAAATGCAAACTGCCTGATGCCAGCCAGCTGAGAGGTTTATTGCTGCCCTTCAGCCCTAATA
AGCCTTTCGTTCCCCTTGTGCAGTGGACCCCCCTGCCCAGGTTGCTGTGGTGCTATCCCTCACT
TACCATCCACAGAGAAATTCCTGGGTACAAGGAGCCAGAGGGGCCCCAGGGAAAGAAACAGCTG
GTGCAAATTTTTACAGTGAAGAGCTGGGCATACCTGTGGCACAGGTTTATAATCCCAGCCCTTG
AGAGGCCGAAGCAAGAGGATTGCTGCAATTTTAAGGCCAGTGTGGGCTACATAGAGAGCTCAAG
GACAGTCTAAACTACATAGTGAGATCCTGTCTCCAAAAAATATATAGACAGGTTGGGAGAGGAC
TGGGCACCTGTGAGGAGAACAGCAGGACGGGGGTTGGGAGCCGCCAGAAGATCCCCTCCGCTGA
ACCTGAGCCGTGGGGGCCTTTGCGGCACCGACACGGGGCGGGGCACAGCGGGCTGCATCGTCGC
CGTGACTCGCGCTTTGCTGCCGTTGGGAGCAGAGCTCCTCAGCTGAAGGAGCAGTGCTGAGGTT
GAGTCACACTCAGGGTCCTGAACTGAAAGAAAAGAAACATTTTTCTGGGAAGCTGAGGCAGGAG
GACTGAAAGTTTGAGTCCAGTTTAGGCAACTTAGTGACTTACAGCCTGTGTCAAAATAAAAAGT
AAAGAAGAGCTGCTGACATAGCTCAATGTTCAGTCCCCGATACTGAAAGAAAAAGAAATTTTTA
AAAAAGGATTAGATTTGATGAGTAATTTTCAACCCTGGCATCCTAGCAGGTCTTTTT

hide sequence

RefSeq Acc Id:

XM_005376408 ⟹ XP_005376465

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	29,312,274 - 29,346,983 (+)	NCBI

Sequence:

show sequence

GCCCCTCAACATCTCGCGATACCAAGGCGCAGGAGCAGCTTTCCACCGACGTGGGCTTGCGGGA
AAGATGGAGTATCCTGCGTTGGGCGCTGTGGATGCTGCGGATGGCGGAAGGGCCGGGCCATACA
AAGGCTCGGGAGAGCGGGAGGGCGGGGAACCGGACGGGGTCCGCTTCGACCGCGAGAGGGCGCG
CCGCCTGTGGGAAGCAGTGTCCAGTACTCAGCCAGTGGGGAGGGAGGAAGTGGAGCACATGATC
CAGAAGAATCAGTGTCTCTTCACCGACACCCAGTGTAAGGTTTGCTGTGCCTTGCTGATTTCTG
AGTCCCAGAAGCTGGCACATTACCAGAGCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGC
AATCCATGGACTGGAGACATTAAAGGGGGAAACGAAGAGGCTAGACTCAGATCAGAAGAGCAGC
AGAAGCAAAGACAAGAACCAGTGCTGCCCCATCTGTAACATGACCTTTTCCTCCCCTGTTGTGG
CCCAGTCGCATTACCTGGGGAAGACCCACGCAAAGAACTTAAAGCTGAAGCAGCAATCCACTAA
GGTGGAAGCCTTGCACCAGAATAGAGAGATGATAGACCCAGACAAGTTCTGCAGCCTCTGCCAT
GCAACTTTCAATGACCCCGTTATGGCTCAGCAGCATTATGTGGGCAAAAAACACAGGAAGCAGG
AGACCAAGCTCAAACTCATGGCACACTACGGACGACTAGCAGACCCTGCTGTCACTGACATATC
AGGTCACCAAAAACAGCAGTATCACCCTTGGGCCAGATTCCAGTGCAGAATCAACTCATTCAGA
AAGACTCCAGCACCTTGGAAGACTGAAGGTGTCTCTGTCCAGCAGCTCATGTAGGACCAGCCAT
GAGTCAGCTTCCTGTGACTGTAGCCTGAGCCTGTCATTGGCCGAGGCAAATCCCCTCCTGCTGT
TCCCTGTGCTGTGGGCCCTGCAGGTCGTTACAGGGAGGCAGGGGGATTGAGAGGATGGGAGTAG
TAGTTGGAGAATGGCCTGCCTCCTTCTCCAGCCCCTCTGGGCTACATGTTCTGTGGCCCCAGTG
CCTGTTTTCCTCTCCAGGTCAGTTTTGTGCAAAAACTGCAGCTGAGGACCAGAATTGCCCCAGG
GCTCCAAGTATCTCCTGTGGAAGCTGGAACTTCATGCAGACTTTGCCAAGGAAGGAAATAGTAG
ATGGAAGTAGCTACCACATGGGAGATCGAGCTTACATCACACTCCCTCACCCTCCGGAAAGTAC
GGGCTTTCCTGAGCCTTAGACCAGATGCTGGCCGGTTGTACAGTTCTTCTAACTGTGATGTGCA
CAGTTCTGGCAGAGCATTCCTGTCCCTCCTGCCATCACCACGGTCCCTGAATGGTGCTAAGGAT
CTGTAACAGCTAAGGACAAACTGGAGCTGGAAGAGGCCTCGATGCCCAGTAAGATCCTAGGAAG
CCCCAGTGGGGACCTTGCCCCTCCTCCATCAGAGGTGCTCTGGCCCAGGGTCATGTGGGAAGGT
CCCCCACCTGCCACTTTCTTTATGGTTCTATGCCCTTAAATGCAAACTGCCTGATGCCAGCCAG
CTGAGAGGTTTATTGCTGCCCTTCAGCCCTAATAAGCCTTTCGTTCCCCTTGTGCAGTGGACCC
CCCTGCCCAGGTTGCTGTGGTGCTATCCCTCACTTACCATCCACAGAGAAATTCCTGGGTACAA
GGAGCCAGAGGGGCCCCAGGGAAAGAAACAGCTGGTGCAAATTTTTACAGTGAAGAGCTGGGCA
TACCTGTGGCACAGGTTTATAATCCCAGCCCTTGAGAGGCCGAAGCAAGAGGATTGCTGCAATT
TTAAGGCCAGTGTGGGCTACATAGAGAGCTCAAGGACAGTCTAAACTACATAGTGAGATCCTGT
CTCCAAAAAATATATAGACAGGTTGGGAGAGGACTGGGCACCTGTGAGGAGAACAGCAGGACGG
GGGTTGGGAGCCGCCAGAAGATCCCCTCCGCTGAACCTGAGCCGTGGGGGCCTTTGCGGCACCG
ACACGGGGCGGGGCACAGCGGGCTGCATCGTCGCCGTGACTCGCGCTTTGCTGCCGTTGGGAGC
AGAGCTCCTCAGCTGAAGGAGCAGTGCTGAGGTTGAGTCACACTCAGGGTCCTGAACTGAAAGA
AAAGAAACATTTTTCTGGGAAGCTGAGGCAGGAGGACTGAAAGTTTGAGTCCAGTTTAGGCAAC
TTAGTGACTTACAGCCTGTGTCAAAATAAAAAGTAAAGAAGAGCTGCTGACATAGCTCAATGTT
CAGTCCCCGATACTGAAAGAAAAAGAAATTTTTAAAAAAGGATTAGATTTGATGAGTAATTTTC
AACCCTGGCATCCTAGCAGGTCTTTTT

hide sequence

RefSeq Acc Id:

XM_005376409 ⟹ XP_005376466

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	29,312,620 - 29,346,983 (+)	NCBI

Sequence:

show sequence

GGCTCTGGTCACACCCCGTGGCGCCCGGCCCGCCTCCTTGCGTTACGCCCGGCCGGACCCCCGT
ACTTAGCCCCAGCACGACTCCAGCGCAAGAAGGCTCCAGGCCTGCCTCGTTCGGGACCTGGGTT
ATTTCCCCTCTCTCGAGGGCTACCCTGGCAAAGACCTACAGAACCTTCCTTGCCGTACCTGCGG
CCAAGCCAAGTACCATTTCTCCCTGACTCGCATCGGCTCCTCCAGAATTCCCCACCTCCATTGT
TTCTTGATCTTTTTCTCTCGGACCCTACGCTAATGGGAGGATCTGGAAAGCACTCTCTTGTTCC
TCCTGGCTTTGGTGATTGTTCCCTGGCTTACTGCTATTTCTAGGTATCTGGCCTCTTGCCGGGA
TCTTAATCTAAAATGATGACCAGGAACCTGAGAAGGTGACCTGGATATGCTTTTTTAGTTTTAT
TTTTTATTTATTTATTTTTTTTTTGTATCTCACACTTAATGGTGAACTGTACCCAAAGCTACGC
TGGGTCATTTCTCTGCGGAAGCGTGTTTGATCTGAGACTGGTGGAGCACATGATCCAGAAGAAT
CAGTGTCTCTTCACCGACACCCAGTGTAAGGTTTGCTGTGCCTTGCTGATTTCTGAGTCCCAGA
AGCTGGCACATTACCAGAGCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGG
ACTGGAGACATTAAAGGGGGAAACGAAGAGGCTAGACTCAGATCAGAAGAGCAGCAGAAGCAAA
GACAAGAACCAGTGCTGCCCCATCTGTAACATGACCTTTTCCTCCCCTGTTGTGGCCCAGTCGC
ATTACCTGGGGAAGACCCACGCAAAGAACTTAAAGCTGAAGCAGCAATCCACTAAGGTGGAAGC
CTTGCACCAGAATAGAGAGATGATAGACCCAGACAAGTTCTGCAGCCTCTGCCATGCAACTTTC
AATGACCCCGTTATGGCTCAGCAGCATTATGTGGGCAAAAAACACAGGAAGCAGGAGACCAAGC
TCAAACTCATGGCACACTACGGACGACTAGCAGACCCTGCTGTCACTGACATATCAGCTGGGAA
GGGCTACCCCTGCAAGACGTGTAAGATAGTGCTGAACTCCATAGAACAGTACCAGGCTCACATC
AGTGGCTTCAAGCACAAGAACCAGTCACCAAAAACAGCAGTATCACCCTTGGGCCAGATTCCAG
TGCAGAATCAACTCATTCAGAAAGACTCCAGCACCTTGGAAGACTGAAGGTGTCTCTGTCCAGC
AGCTCATGTAGGACCAGCCATGAGTCAGCTTCCTGTGACTGTAGCCTGAGCCTGTCATTGGCCG
AGGCAAATCCCCTCCTGCTGTTCCCTGTGCTGTGGGCCCTGCAGGTCGTTACAGGGAGGCAGGG
GGATTGAGAGGATGGGAGTAGTAGTTGGAGAATGGCCTGCCTCCTTCTCCAGCCCCTCTGGGCT
ACATGTTCTGTGGCCCCAGTGCCTGTTTTCCTCTCCAGGTCAGTTTTGTGCAAAAACTGCAGCT
GAGGACCAGAATTGCCCCAGGGCTCCAAGTATCTCCTGTGGAAGCTGGAACTTCATGCAGACTT
TGCCAAGGAAGGAAATAGTAGATGGAAGTAGCTACCACATGGGAGATCGAGCTTACATCACACT
CCCTCACCCTCCGGAAAGTACGGGCTTTCCTGAGCCTTAGACCAGATGCTGGCCGGTTGTACAG
TTCTTCTAACTGTGATGTGCACAGTTCTGGCAGAGCATTCCTGTCCCTCCTGCCATCACCACGG
TCCCTGAATGGTGCTAAGGATCTGTAACAGCTAAGGACAAACTGGAGCTGGAAGAGGCCTCGAT
GCCCAGTAAGATCCTAGGAAGCCCCAGTGGGGACCTTGCCCCTCCTCCATCAGAGGTGCTCTGG
CCCAGGGTCATGTGGGAAGGTCCCCCACCTGCCACTTTCTTTATGGTTCTATGCCCTTAAATGC
AAACTGCCTGATGCCAGCCAGCTGAGAGGTTTATTGCTGCCCTTCAGCCCTAATAAGCCTTTCG
TTCCCCTTGTGCAGTGGACCCCCCTGCCCAGGTTGCTGTGGTGCTATCCCTCACTTACCATCCA
CAGAGAAATTCCTGGGTACAAGGAGCCAGAGGGGCCCCAGGGAAAGAAACAGCTGGTGCAAATT
TTTACAGTGAAGAGCTGGGCATACCTGTGGCACAGGTTTATAATCCCAGCCCTTGAGAGGCCGA
AGCAAGAGGATTGCTGCAATTTTAAGGCCAGTGTGGGCTACATAGAGAGCTCAAGGACAGTCTA
AACTACATAGTGAGATCCTGTCTCCAAAAAATATATAGACAGGTTGGGAGAGGACTGGGCACCT
GTGAGGAGAACAGCAGGACGGGGGTTGGGAGCCGCCAGAAGATCCCCTCCGCTGAACCTGAGCC
GTGGGGGCCTTTGCGGCACCGACACGGGGCGGGGCACAGCGGGCTGCATCGTCGCCGTGACTCG
CGCTTTGCTGCCGTTGGGAGCAGAGCTCCTCAGCTGAAGGAGCAGTGCTGAGGTTGAGTCACAC
TCAGGGTCCTGAACTGAAAGAAAAGAAACATTTTTCTGGGAAGCTGAGGCAGGAGGACTGAAAG
TTTGAGTCCAGTTTAGGCAACTTAGTGACTTACAGCCTGTGTCAAAATAAAAAGTAAAGAAGAG
CTGCTGACATAGCTCAATGTTCAGTCCCCGATACTGAAAGAAAAAGAAATTTTTAAAAAAGGAT
TAGATTTGATGAGTAATTTTCAACCCTGGCATCCTAGCAGGTCTTTTT

hide sequence

RefSeq Acc Id:

XM_013509701 ⟹ XP_013365155

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	29,312,273 - 29,346,983 (+)	NCBI

Sequence:

show sequence

TGCCCCTCAACATCTCGCGATACCAAGGCGCAGGAGCAGCTTTCCACCGACGTGGGCTTGCGGG
AAAGATGGAGTATCCTGCGTTGGGCGCTGTGGATGCTGCGGATGGCGGAAGGGCCGGGCCATAC
AAAGGCTCGGGAGAGCGGGAGGGCGGGGAACCGGACGGGGTCCGCTTCGACCGCGAGAGGGCGC
GCCGCCTGTGGGAAGCAGTGTCCAGTACTCAGCCAGTGGGGAGGGAGGAAGCTCTGTCAAAATG
CCTTACAGATCTTTTTGTTGTGTCCTCCTGCACCTTAGCCTTGCACCAGAATAGAGAGATGATA
GACCCAGACAAGTTCTGCAGCCTCTGCCATGCAACTTTCAATGACCCCGTTATGGCTCAGCAGC
ATTATGTGGGCAAAAAACACAGGAAGCAGGAGACCAAGCTCAAACTCATGGCACACTACGGACG
ACTAGCAGACCCTGCTGTCACTGACATATCAGCTGGGAAGGGCTACCCCTGCAAGACGTGTAAG
ATAGTGCTGAACTCCATAGAACAGTACCAGGCTCACATCAGTGGCTTCAAGCACAAGAACCAGT
CACCAAAAACAGCAGTATCACCCTTGGGCCAGATTCCAGTGCAGAATCAACTCATTCAGAAAGA
CTCCAGCACCTTGGAAGACTGAAGGTGTCTCTGTCCAGCAGCTCATGTAGGACCAGCCATGAGT
CAGCTTCCTGTGACTGTAGCCTGAGCCTGTCATTGGCCGAGGCAAATCCCCTCCTGCTGTTCCC
TGTGCTGTGGGCCCTGCAGGTCGTTACAGGGAGGCAGGGGGATTGAGAGGATGGGAGTAGTAGT
TGGAGAATGGCCTGCCTCCTTCTCCAGCCCCTCTGGGCTACATGTTCTGTGGCCCCAGTGCCTG
TTTTCCTCTCCAGGTCAGTTTTGTGCAAAAACTGCAGCTGAGGACCAGAATTGCCCCAGGGCTC
CAAGTATCTCCTGTGGAAGCTGGAACTTCATGCAGACTTTGCCAAGGAAGGAAATAGTAGATGG
AAGTAGCTACCACATGGGAGATCGAGCTTACATCACACTCCCTCACCCTCCGGAAAGTACGGGC
TTTCCTGAGCCTTAGACCAGATGCTGGCCGGTTGTACAGTTCTTCTAACTGTGATGTGCACAGT
TCTGGCAGAGCATTCCTGTCCCTCCTGCCATCACCACGGTCCCTGAATGGTGCTAAGGATCTGT
AACAGCTAAGGACAAACTGGAGCTGGAAGAGGCCTCGATGCCCAGTAAGATCCTAGGAAGCCCC
AGTGGGGACCTTGCCCCTCCTCCATCAGAGGTGCTCTGGCCCAGGGTCATGTGGGAAGGTCCCC
CACCTGCCACTTTCTTTATGGTTCTATGCCCTTAAATGCAAACTGCCTGATGCCAGCCAGCTGA
GAGGTTTATTGCTGCCCTTCAGCCCTAATAAGCCTTTCGTTCCCCTTGTGCAGTGGACCCCCCT
GCCCAGGTTGCTGTGGTGCTATCCCTCACTTACCATCCACAGAGAAATTCCTGGGTACAAGGAG
CCAGAGGGGCCCCAGGGAAAGAAACAGCTGGTGCAAATTTTTACAGTGAAGAGCTGGGCATACC
TGTGGCACAGGTTTATAATCCCAGCCCTTGAGAGGCCGAAGCAAGAGGATTGCTGCAATTTTAA
GGCCAGTGTGGGCTACATAGAGAGCTCAAGGACAGTCTAAACTACATAGTGAGATCCTGTCTCC
AAAAAATATATAGACAGGTTGGGAGAGGACTGGGCACCTGTGAGGAGAACAGCAGGACGGGGGT
TGGGAGCCGCCAGAAGATCCCCTCCGCTGAACCTGAGCCGTGGGGGCCTTTGCGGCACCGACAC
GGGGCGGGGCACAGCGGGCTGCATCGTCGCCGTGACTCGCGCTTTGCTGCCGTTGGGAGCAGAG
CTCCTCAGCTGAAGGAGCAGTGCTGAGGTTGAGTCACACTCAGGGTCCTGAACTGAAAGAAAAG
AAACATTTTTCTGGGAAGCTGAGGCAGGAGGACTGAAAGTTTGAGTCCAGTTTAGGCAACTTAG
TGACTTACAGCCTGTGTCAAAATAAAAAGTAAAGAAGAGCTGCTGACATAGCTCAATGTTCAGT
CCCCGATACTGAAAGAAAAAGAAATTTTTAAAAAAGGATTAGATTTGATGAGTAATTTTCAACC
CTGGCATCCTAGCAGGTCTTTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005376464	(Get FASTA)	NCBI Sequence Viewer
	XP_005376465	(Get FASTA)	NCBI Sequence Viewer
	XP_005376466	(Get FASTA)	NCBI Sequence Viewer
	XP_013365155	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000023784
	ENSCLAP00000023784.1
	ENSCLAP00000023785.1

RefSeq Acc Id:

XP_005376465 ⟸ XM_005376408

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEYPALGAVDAADGGRAGPYKGSGEREGGEPDGVRFDRERARRLWEAVSSTQPVGREEVEHMIQ
KNQCLFTDTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGLETLKGETKRLDSDQKSSR
SKDKNQCCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHA
TFNDPVMAQQHYVGKKHRKQETKLKLMAHYGRLADPAVTDISGHQKQQYHPWARFQCRINSFRK
TPAPWKTEGVSVQQLM

hide sequence

RefSeq Acc Id:	XP_005376464 ⟸ XM_005376407
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W685 (UniProtKB/TrEMBL), A0A8C2W8H9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEYPALGAVDAADGGRAGPYKGSGEREGGEPDGVRFDRERARRLWEAVSSTQPVGREEVEHMIQ KNQCLFTDTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGLETLKGETKRLDSDQKSSR SKDKNQCCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHA TFNDPVMAQQHYVGKKHRKQETKLKLMAHYGRLADPAVTDISAGKGYPCKTCKIVLNSIEQYQA HISGFKHKNQSPKTAVSPLGQIPVQNQLIQKDSSTLED hide sequence

RefSeq Acc Id:

XP_005376466 ⟸ XM_005376409

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVNCTQSYAGSFLCGSVFDLRLVEHMIQKNQCLFTDTQCKVCCALLISESQKLAHYQSKKHANK
VKRYLAIHGLETLKGETKRLDSDQKSSRSKDKNQCCPICNMTFSSPVVAQSHYLGKTHAKNLKL
KQQSTKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMAHYGRLADP
AVTDISAGKGYPCKTCKIVLNSIEQYQAHISGFKHKNQSPKTAVSPLGQIPVQNQLIQKDSSTL
ED

hide sequence

RefSeq Acc Id:	XP_013365155 ⟸ XM_013509701
- Peptide Label:	isoform X4
- Sequence:	show sequence MEYPALGAVDAADGGRAGPYKGSGEREGGEPDGVRFDRERARRLWEAVSSTQPVGREEALSKCL TDLFVVSSCTLALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMAHYGRL ADPAVTDISAGKGYPCKTCKIVLNSIEQYQAHISGFKHKNQSPKTAVSPLGQIPVQNQLIQKDS STLED hide sequence

RefSeq Acc Id:

ENSCLAP00000023784 ⟸ ENSCLAT00000024010

RefSeq Acc Id:

ENSCLAP00000023785 ⟸ ENSCLAT00000024011

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016325	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024010	ENTREZGENE
	ENSCLAT00000024010.1	UniProtKB/TrEMBL
	ENSCLAT00000024011.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Matrin/U1-like-C_Znf_C2H2	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Znf346	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN 346	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 385B-LIKE	UniProtKB/TrEMBL
Pfam	zf-met	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
	ZnF_U1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8C2W685	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2W8H9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar