Gnb5 (G protein subunit beta 5) - Rat Genome Database

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Gene: Gnb5 (G protein subunit beta 5) Chinchilla lanigera
Analyze
Symbol: Gnb5
Name: G protein subunit beta 5
RGD ID: 8729857
Description: ENCODES a protein that exhibits G-protein gamma-subunit binding (ortholog); GTPase activating protein binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN dark adaptation (ortholog); dopamine receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN eicosanoid signaling pathway; visual phototransduction pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell body (ortholog); cell tip (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: guanine nucleotide binding protein (G protein), beta 5; guanine nucleotide-binding protein subunit beta-5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,619,718 - 2,641,308 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,621,144 - 2,642,298 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gnb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,619,718 - 2,641,308 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,621,144 - 2,642,298 (+)NCBIChiLan1.0ChiLan1.0
GNB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381552,115,100 - 52,191,392 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1552,115,100 - 52,191,392 (-)EnsemblGRCh38hg38GRCh38
GRCh371552,407,297 - 52,483,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361550,200,415 - 50,270,857 (-)NCBINCBI36Build 36hg18NCBI36
Build 341550,201,694 - 50,270,857NCBI
Celera1529,307,586 - 29,378,010 (-)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1529,244,091 - 29,314,529 (-)NCBIHuRef
CHM1_11552,531,429 - 52,601,868 (-)NCBICHM1_1
T2T-CHM13v2.01549,923,746 - 50,000,027 (-)NCBIT2T-CHM13v2.0
Gnb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39975,213,570 - 75,253,205 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl975,213,570 - 75,253,158 (+)EnsemblGRCm39 Ensembl
GRCm38975,306,288 - 75,345,923 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl975,306,288 - 75,345,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv37975,159,202 - 75,193,478 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36975,097,304 - 75,131,580 (+)NCBIMGSCv36mm8
Celera972,470,157 - 72,505,045 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.3NCBI
Gnb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8884,956,629 - 84,985,576 (+)NCBIGRCr8
mRatBN7.2876,076,120 - 76,105,069 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl876,073,306 - 76,105,069 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx881,583,956 - 81,611,881 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0879,848,697 - 79,876,609 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0877,683,292 - 77,711,217 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0882,248,951 - 82,286,493 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl882,257,849 - 82,285,184 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0881,861,124 - 81,888,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4880,128,787 - 80,169,629 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1880,147,826 - 80,189,595 (+)NCBI
Celera875,865,998 - 75,893,582 (+)NCBICelera
Cytogenetic Map8q24NCBI
GNB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,356,598 - 41,417,930 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11545,537,091 - 45,598,417 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01531,061,310 - 31,122,427 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11549,388,026 - 49,447,469 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1549,388,026 - 49,452,123 (-)Ensemblpanpan1.1panPan2
GNB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13017,835,051 - 17,876,443 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3017,837,220 - 17,881,036 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3017,764,218 - 17,810,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03017,983,073 - 18,029,153 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3017,983,085 - 18,029,138 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13017,902,138 - 17,948,227 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03018,020,229 - 18,066,247 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03018,127,756 - 18,173,850 (-)NCBIUU_Cfam_GSD_1.0
Gnb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864096,104,399 - 96,153,552 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647113,955,991 - 13,997,073 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647113,952,462 - 14,001,663 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1119,537,551 - 119,589,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11119,545,382 - 119,589,860 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21132,635,361 - 132,679,752 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12631,209,843 - 31,265,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2631,209,896 - 31,266,873 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048109,964,255 - 110,019,216 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247318,373,724 - 8,397,264 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247318,355,045 - 8,396,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010427   ⟹   ENSCLAP00000010297
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554092,619,718 - 2,641,308 (+)Ensembl
RefSeq Acc Id: XM_013510285   ⟹   XP_013365739
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554092,621,144 - 2,642,298 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365739 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010297.1
RefSeq Acc Id: XP_013365739   ⟸   XM_013510285
- UniProtKB: A0A8C2YMV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010297   ⟸   ENSCLAT00000010427


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007119 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010427.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Gprotein_B UniProtKB/TrEMBL
  Guanine_nucleotide-bd_bsu UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC102022475 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-5 UniProtKB/TrEMBL
  PTHR19850 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PIRSF GN-bd_beta UniProtKB/TrEMBL
PRINTS GPROTEINB UniProtKB/TrEMBL
  GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2YMV1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Gnb5  G protein subunit beta 5    guanine nucleotide binding protein (G protein), beta 5  Symbol and/or name change 5135510 APPROVED
2015-08-25 Gnb5  guanine nucleotide binding protein (G protein), beta 5  LOC102022475  uncharacterized LOC102022475  Symbol and/or name change 5135510 APPROVED