Prelid1 (PRELI domain containing 1)

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Gene: Prelid1 (PRELI domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Prelid1

Name:

PRELI domain containing 1

RGD ID:

8728581

Description:

ENCODES a protein that exhibits phosphatidic acid transfer activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of mitochondrial membrane potential (ortholog); negative regulation of release of cytochrome c from mitochondria (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); COVID-19 (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

PRELI domain-containing protein 1, mitochondrial

RGD Orthologs

Human

Mouse

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,551,424 - 29,554,436 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	29,551,253 - 29,554,778 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 5, Trisomy 5q (ISO)

COVID-19 (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of apoptotic process (ISO)

negative regulation of mitochondrial membrane potential (ISO)

negative regulation of release of cytochrome c from mitochondria (ISO)

positive regulation of cellular respiration (ISO)

positive regulation of endopeptidase activity (ISO)

positive regulation of phospholipid transport (ISO)

positive regulation of T cell apoptotic process (ISO)

regulation of membrane lipid distribution (ISO)

regulation of mitochondrial membrane potential (ISO)

regulation of T cell differentiation (ISO)

Cellular Component

mitochondrial intermembrane space (ISO)

mitochondrion (ISO)

nucleoplasm (ISO)

protein-containing complex (ISO)

Molecular Function

phosphatidic acid transfer activity (ISO)

protein binding (ISO)

References

References - curated


1.	Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data

Prelid1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,551,424 - 29,554,436 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	29,551,253 - 29,554,778 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRELID1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	177,303,799 - 177,306,949 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	177,303,799 - 177,306,949 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	176,730,763 - 176,733,960 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	5	176,730,800 - 176,733,950 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	176,663,441 - 176,666,556 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	5	171,767,411 - 171,770,526 (-)	NCBI
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	171,651,496 - 171,654,693 (+)	NCBI		HuRef
CHM1_1	5	176,163,805 - 176,167,002 (+)	NCBI		CHM1_1

Prelid1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	55,469,868 - 55,473,085 (+)	NCBI	GRCm39		mm39
GRCm38	13	55,322,055 - 55,325,272 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	55,320,500 - 55,325,272 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	55,423,416 - 55,426,633 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	13	55,331,677 - 55,334,894 (+)	NCBI			mm8
Celera	13	56,377,635 - 56,380,852 (+)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI

Prelid1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	9,305,349 - 9,308,389 (-)	NCBI
Rnor_6.0 Ensembl	17	9,834,242 - 9,837,303 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	17	9,834,245 - 9,837,285 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	17	11,943,925 - 11,946,965 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	15,350,084 - 15,353,124 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	17	15,350,084 - 15,353,124 (-)	NCBI
Celera	17	9,383,719 - 9,386,759 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

PRELID1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	179,669,885 - 179,672,965 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,669,885 - 179,672,965 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	172,605,767 - 172,608,901 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

PRELID1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	4	36,051,879 - 36,055,043 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	4	36,051,562 - 36,055,080 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Prelid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936597	1,580,849 - 1,584,445 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRELID1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,641,847 - 80,653,685 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	80,641,844 - 80,646,390 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	82,222,450 - 82,226,996 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRELID1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,313,442 - 79,316,788 (+)	NCBI

Prelid1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	12,774,456 - 12,778,174 (-)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005376421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005376423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01008762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01010771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCLAT00000022650 ⟹ ENSCLAP00000022444

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955408	29,551,424 - 29,554,436 (+)	Ensembl

RefSeq Acc Id:

XM_005376421 ⟹ XP_005376478

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	29,551,256 - 29,554,778 (+)	NCBI

Sequence:

show sequence

TGTACTATCCCCTCATGGCGGCGGCAGTGACTTGGGCGCGGCGAGCCCGAGACTGAAGTGCGAG
CCTGGCGGGCGTGCGCCGAGCCTGGCCCGGCCCGGCCTCCGCGTGCCCTCCGGGCTCTTCACCC
CTGATGCTGCACTGGTACTGAGCTCACCCAGGCCGGGACGATGGTGAAGTATTTCCTGGGCCAG
AGCGTGCTCCGAAGTTCTTGGGACCAAGTGTTCGCTGCCTTTTGGCAGCGGTACCCGAATCCCT
ACAGCAAACATGTCTTGACGGAAGACATAGTACACCGGGAGGTGACTCCTGACCAGAAGCTCCT
GTCCCGGAGACTCCTGACCAAGACCAATAGGATGCCCCGCTGGGCAGAGCGATTGTTTCCTGCC
AACGTTGCTCACTCGGTGTACATCCTGGAGGACTCTATAGTGGACCCACAGAATCAAACCATGA
CCACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGTGGTGGAGGAACGATGTGTTTACTG
TGTGAACTCCGACAACAGTGGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCTCTAGCTTA
TTTGGCGTCTCCAGAGCTGTCCAGGAATTTGGCCTTGCCCGGTTCAAAAGTAATGTGACCAAGA
CCATGAAGGGTTTTGAATACATTCTGGCCAAGCTGCAAGGCGAGGCCCCTTCCAAAACTCTTGT
GGAGACAGCCAAGGAAGCCAAGGAGAAGGCAAAGGAGACAGCACTGGCAGCTACAGAGAAAGCC
AAGGACCTCGCCAACAAGGCTGCCACGAAGCAGCAGCAGCAGCAGCAGCAGTTCGTGTAGCTGG
TGTGGGCCCCGCCACCAGCACCACCACAGGTCACCAGCCAGCATGGCGCTGCTCCCTCTGCCAT
CTCCCCACTGTACTTTATTATTAAAAATCAACTTGCAGCCCTCTGTGCGGTCTGGGTGGTGGGT
TGGGCAGGTAGCCTGTCACTTCTGCAGTACACCACAGTATCCTCGTCTGAGCCCATCCTGCTTA
TTCCCCCACTGGGCACTGACAACAGGTGCAGAGATTTGCCCAGGGTCACTGGCAGGTGCAGGGC
TCTTTGTTCTGCGTGACTCAAGTACCTGGAACAATACCTAGCACATAACAGGCGCTCAATAAAT
ATCTGTTGACTTCATTCA

hide sequence

RefSeq Acc Id:

XM_005376423 ⟹ XP_005376480

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	29,551,253 - 29,554,778 (+)	NCBI

Sequence:

show sequence

GGCTGTACTATCCCCTCATGGCGGCGGCAGTGACTTGGGCGCGGCGAGCCCGAGACTGAAGTGC
GAGCCTGGCGGGCGTGCGCCGAGCCTGGCCCGGCCCGGCCTCCGCGTGCCCTCCGGGCTCTTCA
CCCCTGATGCTGCACTGGTACTGAGCTCACCCAGGCCGGGACGATGGTGAAGTATTTCCTGGGC
CAGAGCGTGCTCCGAAGTTCTTGGGACCAAGTGTTCGCTGCCTTTTGGCAGCGGTACCCGAATC
CCTACAGCAAACATGTCTTGACGGAAGACATAGTACACCGGGAGGTGACTCCTGACCAGAAGCT
CCTGTCCCGGAGACTCCTGACCAAGACCAATAGGATGCCCCGCTGGGCAGAGCGATTGTTTCCT
GCCAACGTTGCTCACTCGGTGTACATCCTGGAGGACTCTATAGTGGACCCACAGAATCAAACCA
TGACCACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGAATTTGGCCTTGCCCGGTTCAA
AAGTAATGTGACCAAGACCATGAAGGGTTTTGAATACATTCTGGCCAAGCTGCAAGGCGAGGCC
CCTTCCAAAACTCTTGTGGAGACAGCCAAGGAAGCCAAGGAGAAGGCAAAGGAGACAGCACTGG
CAGCTACAGAGAAAGCCAAGGACCTCGCCAACAAGGCTGCCACGAAGCAGCAGCAGCAGCAGCA
GCAGTTCGTGTAGCTGGTGTGGGCCCCGCCACCAGCACCACCACAGGTCACCAGCCAGCATGGC
GCTGCTCCCTCTGCCATCTCCCCACTGTACTTTATTATTAAAAATCAACTTGCAGCCCTCTGTG
CGGTCTGGGTGGTGGGTTGGGCAGGTAGCCTGTCACTTCTGCAGTACACCACAGTATCCTCGTC
TGAGCCCATCCTGCTTATTCCCCCACTGGGCACTGACAACAGGTGCAGAGATTTGCCCAGGGTC
ACTGGCAGGTGCAGGGCTCTTTGTTCTGCGTGACTCAAGTACCTGGAACAATACCTAGCACATA
ACAGGCGCTCAATAAATATCTGTTGACTTCATTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005376478	(Get FASTA)	NCBI Sequence Viewer
	XP_005376480	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_005376480 ⟸ XM_005376423
- Peptide Label:	isoform X2
- Sequence:	show sequence MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPR WAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMEFGLARFKSNVTKTMKGFEYIL AKLQGEAPSKTLVETAKEAKEKAKETALAATEKAKDLANKAATKQQQQQQQFV hide sequence

RefSeq Acc Id:

XP_005376478 ⟸ XM_005376421

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPR
WAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDNSGWTEIRR
EAWVSSSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPSKTLVETAKEAKEKAKET
ALAATEKAKDLANKAATKQQQQQQQFV

hide sequence

RefSeq Acc Id:

ENSCLAP00000022444 ⟸ ENSCLAT00000022650

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015398	Ensembl, ENTREZGENE
Ensembl Protein	ENSCLAP00000022444	ENTREZGENE
Ensembl Transcript	ENSCLAT00000022650	ENTREZGENE
NCBI Gene	Prelid1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar