Cdc42 (cell division cycle 42) - Rat Genome Database

Name: Cdc42
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cdc42 (cell division cycle 42) Chinchilla lanigera

Analyze

Symbol:

Cdc42

Name:

cell division cycle 42

RGD ID:

8727298

Description:

ENCODES a protein that exhibits apolipoprotein A-I receptor binding (ortholog); GBD domain binding (ortholog); GTP binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament branching (ortholog); actin filament organization (ortholog); PARTICIPATES IN adenosine signaling pathway; c-Jun N-terminal kinases MAPK signaling pathway; E-cadherin signaling pathway; ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); Adrenal Gland Neoplasms (ortholog); Alzheimer's disease (ortholog); FOUND IN apical part of cell (ortholog); cell leading edge (ortholog); cell periphery (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cell division control protein 42 homolog

RGD Orthologs

Human

Mouse

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDC42 (cell division cycle 42)	NCBI	Ortholog
Mus musculus (house mouse):	Cdc42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cdc42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDC42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC403934 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdc42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDC42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDC42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdc42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	2,255,117 - 2,299,042 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	2,255,940 - 2,299,042 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ISO)

Adrenal Gland Neoplasms (ISO)

Alzheimer's disease (ISO)

Animal Mammary Neoplasms (ISO)

bipolar disorder (ISO)

carcinoma (ISO)

cleft palate (ISO)

congenital disorder of glycosylation Ir (ISO)

Experimental Arthritis (ISO)

Experimental Mammary Neoplasms (ISO)

fibrosarcoma (ISO)

genetic disease (ISO)

human immunodeficiency virus infectious disease (ISO)

hyperprolinemia type 2 (ISO)

microvillus inclusion disease (ISO)

Necrosis (ISO)

Neurodevelopmental Disorders (ISO)

Noonan Like Syndrome (ISO)

pancreatic cancer (ISO)

Parkinson's disease 6 (ISO)

Reperfusion Injury (ISO)

rhinitis (ISO)

Spinal Cord Injuries (ISO)

Takenouchi-Kosaki Syndrome (ISO)

temporal lobe epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (ISO)

actin filament branching (ISO)

actin filament organization (ISO)

adherens junction organization (ISO)

cardiac conduction system development (ISO)

cardiac neural crest cell migration involved in outflow tract morphogenesis (ISO)

Cdc42 protein signal transduction (ISO)

cell junction assembly (ISO)

cellular response to type II interferon (ISO)

dendritic cell migration (ISO)

dendritic spine morphogenesis (ISO)

embryonic heart tube development (ISO)

endocytosis (ISO)

endothelin receptor signaling pathway involved in heart process (ISO)

establishment of epithelial cell apical/basal polarity (ISO)

establishment of Golgi localization (ISO)

establishment of localization in cell (ISO)

establishment or maintenance of apical/basal cell polarity (ISO)

filopodium assembly (ISO)

Golgi organization (ISO)

heart contraction (ISO)

integrin-mediated signaling pathway (ISO)

modification of synaptic structure (ISO)

negative regulation of protein-containing complex assembly (ISO)

neuron fate determination (ISO)

neuropilin signaling pathway (ISO)

nuclear migration (ISO)

nucleus localization (ISO)

organelle transport along microtubule (ISO)

phagocytosis, engulfment (ISO)

positive regulation of catalytic activity (ISO)

positive regulation of cell growth (ISO)

positive regulation of cell migration (ISO)

positive regulation of cytokinesis (ISO)

positive regulation of DNA replication (ISO)

positive regulation of epithelial cell proliferation involved in lung morphogenesis (ISO)

positive regulation of filopodium assembly (ISO)

positive regulation of intracellular protein transport (ISO)

positive regulation of JNK cascade (ISO)

positive regulation of lamellipodium assembly (ISO)

positive regulation of MAPK cascade (ISO)

positive regulation of neuron apoptotic process (ISO)

positive regulation of phosphatidylinositol 3-kinase activity (ISO)

positive regulation of pinocytosis (ISO)

positive regulation of pseudopodium assembly (ISO)

positive regulation of stress fiber assembly (ISO)

positive regulation of substrate adhesion-dependent cell spreading (ISO)

positive regulation of synapse structural plasticity (ISO)

protein localization (ISO)

protein phosphorylation (ISO)

regulation of actin cytoskeleton organization (ISO)

regulation of attachment of spindle microtubules to kinetochore (ISO)

regulation of filopodium assembly (ISO)

regulation of lamellipodium assembly (ISO)

regulation of mitotic nuclear division (ISO)

regulation of modification of postsynaptic structure (ISO)

regulation of postsynapse organization (ISO)

regulation of protein binding (ISO)

regulation of stress fiber assembly (ISO)

sprouting angiogenesis (ISO)

submandibular salivary gland formation (ISO)

substantia nigra development (ISO)

Cellular Component

apical part of cell (ISO)

cell leading edge (ISO)

cell periphery (ISO)

cell projection (ISO)

cell-cell junction (ISO)

centrosome (ISO)

cytoplasm (ISO)

cytoplasmic ribonucleoprotein granule (ISO)

cytosol (ISO)

dendritic spine (ISO)

filopodium (ISO)

glutamatergic synapse (ISO)

Golgi membrane (ISO)

Golgi transport complex (ISO)

leading edge membrane (ISO)

membrane (ISO)

midbody (ISO)

mitotic spindle (ISO)

neuron projection (ISO)

neuronal cell body (ISO)

phagocytic vesicle (ISO)

plasma membrane (ISO)

protein-containing complex (ISO)

Schaffer collateral - CA1 synapse (ISO)

secretory granule (ISO)

spindle midzone (ISO)

storage vacuole (ISO)

Molecular Function

apolipoprotein A-I receptor binding (ISO)

GBD domain binding (ISO)

GTP binding (ISO)

GTP-dependent protein binding (ISO)

GTPase activity (ISO)

identical protein binding (ISO)

mitogen-activated protein kinase kinase kinase binding (ISO)

protein binding (ISO)

protein kinase binding (ISO)

Rho GDP-dissociation inhibitor binding (ISO)

thioesterase binding (ISO)

ubiquitin protein ligase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

adenosine signaling pathway (ISO)

c-Jun N-terminal kinases MAPK signaling pathway (ISO)

E-cadherin signaling pathway (ISO)

endothelin signaling pathway (ISO)

ephrin - ephrin receptor bidirectional signaling axis (ISO)

insulin secretion pathway (ISO)

N-cadherin signaling pathway (ISO)

p38 MAPK signaling pathway (ISO)

Rho/Rac/Cdc42 mediated signaling pathway (ISO)

sphingosine 1-phosphate signaling pathway (ISO)

vascular endothelial growth factor signaling pathway (ISO)

Wnt signaling, non-canonical pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data

Cdc42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	2,255,117 - 2,299,042 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	2,255,940 - 2,299,042 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDC42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	22,052,709 - 22,101,360 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	22,052,627 - 22,101,360 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	22,379,202 - 22,427,853 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	22,251,707 - 22,292,023 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	22,124,487 - 22,164,741	NCBI
Celera	1	20,702,109 - 20,742,389 (+)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	20,622,960 - 20,663,212 (+)	NCBI		HuRef
CHM1_1	1	22,491,651 - 22,531,931 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	21,876,517 - 21,925,101 (+)	NCBI		T2T-CHM13v2.0

Cdc42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	137,047,007 - 137,085,070 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	137,047,007 - 137,085,031 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	137,319,696 - 137,357,759 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	137,319,696 - 137,357,720 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	136,875,611 - 136,913,652 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	136,591,779 - 136,608,205 (-)	NCBI		MGSCv36	mm8
Celera	4	135,540,002 - 135,577,854 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	69.83	NCBI

Cdc42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	149,555,069 - 149,593,239 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	149,553,724 - 149,593,111 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	152,253,400 - 152,289,928 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	154,027,699 - 154,064,227 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	154,009,694 - 154,046,226 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	155,690,267 - 155,728,385 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	155,691,390 - 155,728,300 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	159,446,154 - 159,485,163 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	156,106,123 - 156,143,040 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	156,116,164 - 156,153,079 (-)	NCBI
Celera	5	147,953,334 - 147,989,998 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

CDC42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	203,958,664 - 203,998,887 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	21,245,970 - 21,286,210 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	22,188,722 - 22,228,351 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

LOC403934
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	77,153,276 - 77,169,947 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	77,153,095 - 77,199,211 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	4	4,445,564 - 4,446,293 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	4	4,457,005 - 4,457,734 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	4,574,515 - 4,575,244 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	4,796,130 - 4,796,859 (+)	NCBI		UU_Cfam_GSD_1.0

Cdc42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	41,731,950 - 41,773,901 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936474	7,556,765 - 7,598,687 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	80,035,123 - 80,089,233 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	80,035,034 - 80,089,243 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	74,057,184 - 74,116,824 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDC42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	110,568,004 - 110,608,318 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	110,569,352 - 110,582,562 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	5,689,907 - 5,730,175 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdc42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	6,874,453 - 6,891,952 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005394731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013519580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01031197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCLAT00000016544 ⟹ ENSCLAP00000016380

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955452	2,255,117 - 2,299,042 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000016545 ⟹ ENSCLAP00000016381

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955452	2,255,940 - 2,296,258 (+)	Ensembl

RefSeq Acc Id:

XM_005394731 ⟹ XP_005394788

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	2,255,940 - 2,299,042 (+)	NCBI

Sequence:

show sequence

GTCAGGTGCGTGCCCCTGTCCGGCCGCCGAGGAGACCCCGCGCACTGCTGCCAACGCCCGGGCG
GAGAAGCTGAGGTCAACACCAAATTTGAAATATTTAAGCTATTTCCACAATGCAGACAATTAAG
TGCGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACGTGTCTCCTGATATCCTATACAACAAACA
AATTTCCATCTGAATATGTACCAACCGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGG
AGAGCCATATACTCTTGGGCTTTTTGATACTGCAGGGCAAGAAGATTATGACAGATTACGACCT
TTGAGTTATCCACAAACAGATGTATTTCTAGTCTGTTTTTCAGTGGTCTCTCCATCCTCATTTG
AAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCT
TGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAA
CAGAAACCTATCACTCCAGAGACTGCTGAAAAGTTGGCCCGTGACCTGAAGGCTGTCAAGTATG
TGGAGTGTTCTGCACTCACACAGAAAGGCCTAAAGAATGTGTTTGATGAAGCAATATTGGCTGC
CCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGAACATCTCTCCAGATC
CTTTCTGCACAGCTGGTGTCGGCATCATACTAAAAGCAATGTTTAAATCAAACTAAAGATTAAA
AATTAAAATTCGTTTCTGCAATAATGACAAATGCCCTGCACCTACCCACATGTACTTGTGTGAG
ACAAGGCCGATAGGTATGCCCCCACCCCTCCCAGGACTAGTTAATTTTGAGTAATTGTGATTGT
CAGAAAAGTGATCAGTACTAGTTTTTGTTTTATTGTTTCAAAAAACTTTTTTTTGGTTGTTTAA
AAGTAAGGCATGCTTGTGATGACTCTGTAACGACTAATTTGAATTGTTGAAGCTGCTCCCTGGT
TCCACTTGAGAGTAATCTGGGACATCTTAGTATTTTTTGTTTTTTTCCTTTTTTTGGGCGGGGG
GAGTGTGTGTGGGGGTTTGTTTTTTAGTTTTGTTTTTTAAAAACTCATTAACCAGTGGTCAGCC
CTTAGGGGAGGAGGACGGATTGATTCCACATTCCACTTCCTAGATCTAGTTTAGAAAAATGTGT
TCCCCACCTGGTGCTCTTAGGAAGGAGTATAGTAAATGCCTCATTTAATAACATACTCCTTTTT
GAAAGTTGCCTTTTTTTCTCTCTCCACCCTTGAGTAGATCCAGTATTTGATGAAACTCATGAAA
GTGGGTGGAAGCTGTCTTGCCCCTCCTCTTTTCTAGGATGCACTCTGTATGTGACTGTGACTTT
CAAGGAAATTTGTTTGCCACTTGCTGTTTTTTTTTTTTTTTGGAAGTTAATTTTAACTTCTTTC
ACTGATAAATGAAGAAAAGTATTGCACCTTTTGAAATACACCAAATGGATTGAGTTTGTAATTA
AAAAAAATTTTTCCCCCTGTCAGTCATTGTCTTATATGCTTAGCATAGATTTGCAATTGAGTAG
TGTTTGGTGTTCCTAGATCCCAGCAGAAGACCTGACGCAGAGGAAATATGAGGGGTGGTGCTAC
AAGACAGATACGTGTGGGGTAATTGTCATCCTCTTTCAGGTTGTGAGGATGCGGGCCTGCTTCA
TTAAGAAGCTACGGGGTGGGCAGGGGTGGGGAGAACACTTAGCCAACATGGGGACCAGCTAGGA
GAATCCCCTTACTTCTGTTTTCCGTATGAGGAACCCTATAGCAACTGGTTGAGGCTCTTTAGTT
TAATAAAAATCATGCAAGGAGTCTTATGAAGACTCTTAGTAAGTGTTAATAGGGACTTTATCAG
CTTATTTTTGTTGCAGTTTCCAGTTTTTAATGTTTAGGTTATTTTTTCACCTTCCCAAAATCCT
AATTCTTATAGATTTCATTAGTGTTGAACCAATGCTTTCTCATGTCTCAATCTTTGTATATGCA
TTCTTTTCAGATGTATTAAACAAACAAAAACCCTTCACAA

hide sequence

RefSeq Acc Id:

XM_005394732 ⟹ XP_005394789

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	2,255,990 - 2,299,042 (+)	NCBI

Sequence:

show sequence

CCAACGCCCGGGCGGAGAAGCTGAGTGTATGGCTCAGTATTACATTAAGTGCTTTGAGAGGGGA
ACACAGAAGTAAGCCTAGTTCTTTCCCCAAAATAAATGTCAACACCAAATTTGAAATATTTAAG
CTATTTCCACAATGCAGACAATTAAGTGCGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACGTG
TCTCCTGATATCCTATACAACAAACAAATTTCCATCTGAATATGTACCAACCGTTTTTGACAAC
TATGCAGTCACAGTTATGATTGGTGGAGAGCCATATACTCTTGGGCTTTTTGATACTGCAGGGC
AAGAAGATTATGACAGATTACGACCTTTGAGTTATCCACAAACAGATGTATTTCTAGTCTGTTT
TTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCAC
CACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTA
CTATTGAGAAACTTGCCAAGAACAAACAGAAACCTATCACTCCAGAGACTGCTGAAAAGTTGGC
CCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTCACACAGAAAGGCCTAAAGAAT
GTGTTTGATGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAGGTGTG
TGCTGCTATGAACATCTCTCCAGATCCTTTCTGCACAGCTGGTGTCGGCATCATACTAAAAGCA
ATGTTTAAATCAAACTAAAGATTAAAAATTAAAATTCGTTTCTGCAATAATGACAAATGCCCTG
CACCTACCCACATGTACTTGTGTGAGACAAGGCCGATAGGTATGCCCCCACCCCTCCCAGGACT
AGTTAATTTTGAGTAATTGTGATTGTCAGAAAAGTGATCAGTACTAGTTTTTGTTTTATTGTTT
CAAAAAACTTTTTTTTGGTTGTTTAAAAGTAAGGCATGCTTGTGATGACTCTGTAACGACTAAT
TTGAATTGTTGAAGCTGCTCCCTGGTTCCACTTGAGAGTAATCTGGGACATCTTAGTATTTTTT
GTTTTTTTCCTTTTTTTGGGCGGGGGGAGTGTGTGTGGGGGTTTGTTTTTTAGTTTTGTTTTTT
AAAAACTCATTAACCAGTGGTCAGCCCTTAGGGGAGGAGGACGGATTGATTCCACATTCCACTT
CCTAGATCTAGTTTAGAAAAATGTGTTCCCCACCTGGTGCTCTTAGGAAGGAGTATAGTAAATG
CCTCATTTAATAACATACTCCTTTTTGAAAGTTGCCTTTTTTTCTCTCTCCACCCTTGAGTAGA
TCCAGTATTTGATGAAACTCATGAAAGTGGGTGGAAGCTGTCTTGCCCCTCCTCTTTTCTAGGA
TGCACTCTGTATGTGACTGTGACTTTCAAGGAAATTTGTTTGCCACTTGCTGTTTTTTTTTTTT
TTTGGAAGTTAATTTTAACTTCTTTCACTGATAAATGAAGAAAAGTATTGCACCTTTTGAAATA
CACCAAATGGATTGAGTTTGTAATTAAAAAAAATTTTTCCCCCTGTCAGTCATTGTCTTATATG
CTTAGCATAGATTTGCAATTGAGTAGTGTTTGGTGTTCCTAGATCCCAGCAGAAGACCTGACGC
AGAGGAAATATGAGGGGTGGTGCTACAAGACAGATACGTGTGGGGTAATTGTCATCCTCTTTCA
GGTTGTGAGGATGCGGGCCTGCTTCATTAAGAAGCTACGGGGTGGGCAGGGGTGGGGAGAACAC
TTAGCCAACATGGGGACCAGCTAGGAGAATCCCCTTACTTCTGTTTTCCGTATGAGGAACCCTA
TAGCAACTGGTTGAGGCTCTTTAGTTTAATAAAAATCATGCAAGGAGTCTTATGAAGACTCTTA
GTAAGTGTTAATAGGGACTTTATCAGCTTATTTTTGTTGCAGTTTCCAGTTTTTAATGTTTAGG
TTATTTTTTCACCTTCCCAAAATCCTAATTCTTATAGATTTCATTAGTGTTGAACCAATGCTTT
CTCATGTCTCAATCTTTGTATATGCATTCTTTTCAGATGTATTAAACAAACAAAAACCCTTCAC
AA

hide sequence

RefSeq Acc Id:

XM_005394733 ⟹ XP_005394790

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	2,255,940 - 2,296,258 (+)	NCBI

Sequence:

show sequence

GTCAGGTGCGTGCCCCTGTCCGGCCGCCGAGGAGACCCCGCGCACTGCTGCCAACGCCCGGGCG
GAGAAGCTGAGGTCAACACCAAATTTGAAATATTTAAGCTATTTCCACAATGCAGACAATTAAG
TGCGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACGTGTCTCCTGATATCCTATACAACAAACA
AATTTCCATCTGAATATGTACCAACCGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGG
AGAGCCATATACTCTTGGGCTTTTTGATACTGCAGGGCAAGAAGATTATGACAGATTACGACCT
TTGAGTTATCCACAAACAGATGTATTTCTAGTCTGTTTTTCAGTGGTCTCTCCATCCTCATTTG
AAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCT
TGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAA
CAGAAACCTATCACTCCAGAGACTGCTGAAAAGTTGGCCCGTGACCTGAAGGCTGTCAAGTATG
TGGAGTGTTCTGCACTCACACAGAGAGGTCTGAAGAATGTGTTTGATGAGGCTATCCTAGCTGC
CCTCGAGCCTCCGGAAACTCAACCCAAAAGGAAGTGCTGTATATTCTAAACTGTTTTCTCCTTC
CCCTCTTTGCTGCTGCTTCCTGTCCCACTACTGTAGAAAGAGCGTTTAAAAACAAAGGAATAAA
ACCATCCTGTTTGAAA

hide sequence

RefSeq Acc Id:

XM_013519580 ⟹ XP_013375034

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	2,269,944 - 2,299,042 (+)	NCBI

Sequence:

show sequence

GCCCCAAGGTCTCCTGCATGCTAAGCAAGTGCTTCACCACTGCTACTGTACATCCCCAGCTCCT
GCACAGTAATTTCTTACAGTCAACACCAAATTTGAAATATTTAAGCTATTTCCACAATGCAGAC
AATTAAGTGCGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACGTGTCTCCTGATATCCTATACA
ACAAACAAATTTCCATCTGAATATGTACCAACCGTTTTTGACAACTATGCAGTCACAGTTATGA
TTGGTGGAGAGCCATATACTCTTGGGCTTTTTGATACTGCAGGGCAAGAAGATTATGACAGATT
ACGACCTTTGAGTTATCCACAAACAGATGTATTTCTAGTCTGTTTTTCAGTGGTCTCTCCATCC
TCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTT
TCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAA
GAACAAACAGAAACCTATCACTCCAGAGACTGCTGAAAAGTTGGCCCGTGACCTGAAGGCTGTC
AAGTATGTGGAGTGTTCTGCACTCACACAGAAAGGCCTAAAGAATGTGTTTGATGAAGCAATAT
TGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGAACATCTCT
CCAGATCCTTTCTGCACAGCTGGTGTCGGCATCATACTAAAAGCAATGTTTAAATCAAACTAAA
GATTAAAAATTAAAATTCGTTTCTGCAATAATGACAAATGCCCTGCACCTACCCACATGTACTT
GTGTGAGACAAGGCCGATAGGTATGCCCCCACCCCTCCCAGGACTAGTTAATTTTGAGTAATTG
TGATTGTCAGAAAAGTGATCAGTACTAGTTTTTGTTTTATTGTTTCAAAAAACTTTTTTTTGGT
TGTTTAAAAGTAAGGCATGCTTGTGATGACTCTGTAACGACTAATTTGAATTGTTGAAGCTGCT
CCCTGGTTCCACTTGAGAGTAATCTGGGACATCTTAGTATTTTTTGTTTTTTTCCTTTTTTTGG
GCGGGGGGAGTGTGTGTGGGGGTTTGTTTTTTAGTTTTGTTTTTTAAAAACTCATTAACCAGTG
GTCAGCCCTTAGGGGAGGAGGACGGATTGATTCCACATTCCACTTCCTAGATCTAGTTTAGAAA
AATGTGTTCCCCACCTGGTGCTCTTAGGAAGGAGTATAGTAAATGCCTCATTTAATAACATACT
CCTTTTTGAAAGTTGCCTTTTTTTCTCTCTCCACCCTTGAGTAGATCCAGTATTTGATGAAACT
CATGAAAGTGGGTGGAAGCTGTCTTGCCCCTCCTCTTTTCTAGGATGCACTCTGTATGTGACTG
TGACTTTCAAGGAAATTTGTTTGCCACTTGCTGTTTTTTTTTTTTTTTGGAAGTTAATTTTAAC
TTCTTTCACTGATAAATGAAGAAAAGTATTGCACCTTTTGAAATACACCAAATGGATTGAGTTT
GTAATTAAAAAAAATTTTTCCCCCTGTCAGTCATTGTCTTATATGCTTAGCATAGATTTGCAAT
TGAGTAGTGTTTGGTGTTCCTAGATCCCAGCAGAAGACCTGACGCAGAGGAAATATGAGGGGTG
GTGCTACAAGACAGATACGTGTGGGGTAATTGTCATCCTCTTTCAGGTTGTGAGGATGCGGGCC
TGCTTCATTAAGAAGCTACGGGGTGGGCAGGGGTGGGGAGAACACTTAGCCAACATGGGGACCA
GCTAGGAGAATCCCCTTACTTCTGTTTTCCGTATGAGGAACCCTATAGCAACTGGTTGAGGCTC
TTTAGTTTAATAAAAATCATGCAAGGAGTCTTATGAAGACTCTTAGTAAGTGTTAATAGGGACT
TTATCAGCTTATTTTTGTTGCAGTTTCCAGTTTTTAATGTTTAGGTTATTTTTTCACCTTCCCA
AAATCCTAATTCTTATAGATTTCATTAGTGTTGAACCAATGCTTTCTCATGTCTCAATCTTTGT
ATATGCATTCTTTTCAGATGTATTAAACAAACAAAAACCCTTCACAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005394788	(Get FASTA)	NCBI Sequence Viewer
	XP_005394789	(Get FASTA)	NCBI Sequence Viewer
	XP_005394790	(Get FASTA)	NCBI Sequence Viewer
	XP_013375034	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_005394790 ⟸ XM_005394733
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VJ29 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK LAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPPETQPKRKCCIF hide sequence

RefSeq Acc Id:	XP_005394789 ⟸ XM_005394732
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VJ40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK LAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL hide sequence

RefSeq Acc Id:	XP_005394788 ⟸ XM_005394731
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VJ40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK LAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL hide sequence

RefSeq Acc Id:	XP_013375034 ⟸ XM_013519580
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VJ40 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK LAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL hide sequence

RefSeq Acc Id:

ENSCLAP00000016381 ⟸ ENSCLAT00000016545

RefSeq Acc Id:

ENSCLAP00000016380 ⟸ ENSCLAT00000016544

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000011266	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSCLAP00000016380	ENTREZGENE
	ENSCLAP00000016380.1	UniProtKB/TrEMBL
	ENSCLAP00000016381	ENTREZGENE
	ENSCLAP00000016381.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000016544	ENTREZGENE
	ENSCLAT00000016544.1	UniProtKB/TrEMBL
	ENSCLAT00000016545	ENTREZGENE
	ENSCLAT00000016545.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Cdc42	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
	Small_GTPase_Rho	UniProtKB/TrEMBL
NCBI Gene	Cdc42	ENTREZGENE
PANTHER	CELL DIVISION CONTROL PROTEIN 42 HOMOLOG	UniProtKB/TrEMBL
	CELL DIVISION CONTROL PROTEIN 42 HOMOLOG	UniProtKB/TrEMBL
	PTHR24072	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
SMART	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
TIGRFAMs	small_GTP	UniProtKB/TrEMBL
UniProt	A0A8C2VJ29	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VJ40	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI

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RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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Imported Annotations - SMPDB

Imported Annotations - PID (archival)