Tmem59l (transmembrane protein 59 like)

Gene: Tmem59l (transmembrane protein 59 like) Chinchilla lanigera

Analyze

Symbol:

Tmem59l

Name:

transmembrane protein 59 like

RGD ID:

8725871

Description:

INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); ovarian cyst (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transmembrane protein 59-like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,981,909 - 2,988,080 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,983,699 - 2,988,080 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ISO)

ovarian cyst (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

branching involved in ureteric bud morphogenesis (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Tmem59l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,981,909 - 2,988,080 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,983,699 - 2,988,080 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM59L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	18,612,870 - 18,621,039 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	18,607,430 - 18,621,039 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	18,723,680 - 18,731,849 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	18,584,682 - 18,592,849 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	18,584,711 - 18,592,822	NCBI
Celera	19	18,625,877 - 18,634,029 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,286,195 - 18,294,347 (+)	NCBI		HuRef
CHM1_1	19	18,723,794 - 18,731,960 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	18,747,943 - 18,756,107 (+)	NCBI		T2T-CHM13v2.0

Tmem59l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,936,505 - 70,939,998 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,936,517 - 70,940,008 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	70,483,855 - 70,487,348 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,483,867 - 70,487,358 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,007,766 - 73,011,257 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	73,412,856 - 73,416,347 (-)	NCBI		MGSCv36	mm8
Celera	8	73,040,279 - 73,043,770 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.15	NCBI

Tmem59l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,975,217 - 18,979,354 (+)	NCBI		GRCr8
mRatBN7.2	16	18,941,370 - 18,945,381 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,941,567 - 18,945,381 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,983,445 - 18,987,168 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,116,252 - 20,119,975 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,036,407 - 19,040,130 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,691,956 - 20,695,701 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,691,978 - 20,695,701 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,547,447 - 20,551,180 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,448,403 - 19,452,133 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,448,409 - 19,452,106 (+)	NCBI
Celera	16	19,133,030 - 19,136,753 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

TMEM59L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	23,466,005 - 23,479,748 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	22,478,891 - 22,488,150 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,089,605 - 18,097,943 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,059,627 - 19,068,171 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,059,660 - 19,067,669 (+)	Ensembl	panpan1.1		panPan2

TMEM59L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	44,450,164 - 44,455,983 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	44,450,349 - 44,455,933 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	44,364,940 - 44,370,757 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,936,442 - 44,942,263 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,795,504 - 44,942,267 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	44,173,818 - 44,179,635 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	44,583,774 - 44,589,594 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,859,226 - 44,865,046 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem59l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	203,130,553 - 203,136,185 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	2,679,227 - 2,685,492 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	2,679,689 - 2,685,323 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM59L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	59,210,792 - 59,223,202 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	59,211,404 - 59,223,017 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	58,965,371 - 58,970,420 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM59L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,080,955 - 17,093,524 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,080,093 - 17,093,574 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	2,247,652 - 2,255,760 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem59l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	1,766,758 - 1,772,260 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	1,767,673 - 1,772,145 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01068846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01034472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01034473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000009239 ⟹ ENSCLAP00000009110

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955524	2,981,909 - 2,988,080 (-)	Ensembl

RefSeq Acc Id:

XM_005409589 ⟹ XP_005409646

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955524	2,983,699 - 2,988,080 (-)	NCBI

Sequence:

show sequence

CGACCCGCGAGGCTGTCGCCCGTCTGCCGGGGCGGGGCGTCGAGGGGACACGCGCCCTTCGCGA
GCACCTGCGCCGGCCATGCAGCCAGGCCTGGGACATCTGTCCAGAGGACCGCGGCTTGGGGGCG
TCTCCAGGCTGCCTCGCTCGCTGACGTCAGCGCCGCCCCGCAGCCGCGTCCCGCACCGCCGGCC
ATGGCTGCGGCCGCGCTGATGTCGCCGGTGTCGCCGCCGCTGCTGCTGTTGCTGCTACTGCTGC
TGGGGTCCCCGCCCGTCGCGCCCGCGCCGCCAGCCCGGGACCCCTTCGCCCCCCAGCTCGGGGA
CACCCAGAACTGCCAGCAGCGCTGTCGCGAGCGCGTCCTCGGACCGCGGCCCTCGCAGGCAGGG
CAGGAGGTCCCCTCAGAGTCCCCATACGACAGGGCTGTCCAGATCAGCGCCTGCGAGCGGGGCT
GCCGGCTCTTCTCCATCTGCCGCTTCGTGGCCAGGAGCTCCAGGCCGAACGCCACCCAGACCGA
GTGCGAAGCAGCATGCGTGGAAGCCTACGTGAAGGACACGGAGCGGCGAGCCTGCCGGGGGGGC
TGCTGGATCCAGGCTCCCCAGCCGGAGCTGGAGTCCCAGCTCGAAAAGAGAAAGGTCCTGGAAG
CTCCTGGTGGGGCCCTGTCCCTCCTGGACTTATTTTCCACCCTCTGCAACGACCTCGTCAACTC
GGCCCAGGGCTTTGTCTCCTCCACCTGGACGTACTACTTGCAGACTGACAATGGGAAGGTGGTG
GTTTTTCAGACCCAGCCTGTGGTCGAGAGCCTGGGCTTCCAGGGGAGTCGCCTGCAGCGAGTGG
AGGTGACCTGGAGGGGATCGCGTCCTGAGGCCCTGGAGGTGCACGTGGATCCCGTAGGCCCCTT
GGACAAGGTGCGCAAAGCCAAGATCCGCGTGAAGACCAGCAGCAAGGCCAAGGTGGAGTCGGAG
GAGCAGCAGGACAATGACTTCCTCAGCTGCATGTCCCGGCGCTCCGGGCTGCCCCGCTGGATCC
TGGCCTGCTGCCTCTTCCTCTCCGTGCTGGTCATGCTGTGGCTCAGCTGCTCCACGCTGGTGAC
TGCGCCGGGCCAGCACCTCAAATTCCAGCCACTGACCCTGGAGCAGCACAAGGGCTTCATGGTG
GACCCGGACTGGCCCCTGTACCCGCCTCCGGCGCACGCCTTCGAGGACAGCCCCCCGCCCTACA
AGCTCAAGCTGGACCTGACCAAGCTGTAGCTCCGCAGCCAAGGGAACGCCCCGGGGCCTCCCTG
TCCTGCACCCGAGTCTAAGGTTGGGGGCCACCCTTGCGCCCCTCCGCCCTGACCCTCCTTGTCC
CCCCATCCCATCTTGCACTCCTCAGTCCCGGGGTGGGTCTGGCTTGGGCTCTTCCTGTCCCTCT
TCCTTGGGGCTGCGCTACTTTTGTCTTTGCTCTTGTGGCTTTTGGAGTATCTGACCTGTTCTGT
GTTGCCCTCCGTCTTCCTCTGTCCCCTGTCTGAGGGGCTGAGGCAAGGTGGAGCCGCTTCCTCT
GCAGCTTCCCTCTCATCCCTGGAGGCCCGCCCCCTCTGGGGGAGCAGGGCCCTGGGGACCCCAG
CAGGGTGGGCGGGCGGGTGGAGGAGGGGCCAGGCTGGGGAGGAATAAACCCTGTACATAAAGGA
CAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409646	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009110
	ENSCLAP00000009110.1

RefSeq Acc Id:

XP_005409646 ⟸ XM_005409589

- UniProtKB:

A0A8C2V2S4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAAALMSPVSPPLLLLLLLLLGSPPVAPAPPARDPFAPQLGDTQNCQQRCRERVLGPRPSQAG
QEVPSESPYDRAVQISACERGCRLFSICRFVARSSRPNATQTECEAACVEAYVKDTERRACRGG
CWIQAPQPELESQLEKRKVLEAPGGALSLLDLFSTLCNDLVNSAQGFVSSTWTYYLQTDNGKVV
VFQTQPVVESLGFQGSRLQRVEVTWRGSRPEALEVHVDPVGPLDKVRKAKIRVKTSSKAKVESE
EQQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTLVTAPGQHLKFQPLTLEQHKGFMV
DPDWPLYPPPAHAFEDSPPPYKLKLDLTKL

hide sequence

RefSeq Acc Id:

ENSCLAP00000009110 ⟸ ENSCLAT00000009239

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006357	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009239	ENTREZGENE
	ENSCLAT00000009239.1	UniProtKB/TrEMBL
InterPro	Uncharacterised_TMEM59	UniProtKB/TrEMBL
NCBI Gene	Tmem59l	ENTREZGENE
PANTHER	PTHR28652	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 59-LIKE	UniProtKB/TrEMBL
Pfam	BSMAP	UniProtKB/TrEMBL
UniProt	A0A8C2V2S4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Tmem59l	transmembrane protein 59 like		transmembrane protein 59-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD