Dop1a (DOP1 leucine zipper like protein A) - Rat Genome Database

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Gene: Dop1a (DOP1 leucine zipper like protein A) Chinchilla lanigera
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Symbol: Dop1a
Name: DOP1 leucine zipper like protein A
RGD ID: 8725421
Description: ASSOCIATED WITH hyper IgE syndrome (ortholog); immunodeficiency 23 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi-associated vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: dopey family member 1; Dopey1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541110,838,271 - 10,905,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541110,836,060 - 10,903,650 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Dop1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541110,838,271 - 10,905,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541110,836,060 - 10,903,650 (+)NCBIChiLan1.0ChiLan1.0
DOP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl683,067,666 - 83,171,350 (+)EnsemblGRCh38hg38GRCh38
GRCh38683,067,671 - 83,171,351 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37683,777,390 - 83,881,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36683,834,104 - 83,934,846 (+)NCBINCBI36hg18NCBI36
Build 34683,834,103 - 83,934,846NCBI
Celera684,210,683 - 84,311,433 (+)NCBI
Cytogenetic Map6q14.1NCBI
HuRef681,005,428 - 81,106,439 (+)NCBIHuRef
CHM1_1683,875,064 - 83,975,883 (+)NCBICHM1_1
Dop1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39986,349,194 - 86,437,859 (+)NCBIGRCm39mm39
GRCm39 Ensembl986,349,207 - 86,437,976 (+)Ensembl
GRCm38986,467,141 - 86,555,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl986,467,154 - 86,555,923 (+)EnsemblGRCm38mm10GRCm38
MGSCv37986,360,761 - 86,449,413 (+)NCBIGRCm37mm9NCBIm37
Celera983,539,080 - 83,632,534 (+)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.58NCBI
Dop1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2887,415,266 - 87,517,935 (+)NCBI
Rnor_6.0 Ensembl894,122,728 - 94,225,031 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0894,122,733 - 94,225,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0893,635,887 - 93,738,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4891,706,333 - 91,808,911 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1891,755,741 - 91,828,667 (+)NCBI
Celera887,018,864 - 87,121,447 (+)NCBICelera
Cytogenetic Map8q31NCBI
DOP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1684,238,657 - 84,339,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl684,238,657 - 84,339,687 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0680,964,118 - 81,065,351 (+)NCBIMhudiblu_PPA_v0panPan3
DOP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11243,477,738 - 43,585,482 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1243,478,637 - 43,585,745 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1243,291,119 - 43,398,895 (+)NCBI
ROS_Cfam_1.01244,243,994 - 44,352,812 (+)NCBI
UMICH_Zoey_3.11243,583,932 - 43,692,259 (+)NCBI
UNSW_CanFamBas_1.01243,532,887 - 43,641,003 (+)NCBI
UU_Cfam_GSD_1.01243,728,446 - 43,802,109 (+)NCBI
Dop1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494678,755,864 - 78,862,558 (+)NCBI
SpeTri2.0NW_0049365107,609,941 - 7,715,013 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DOP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl183,026,494 - 83,137,427 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1183,029,817 - 83,137,441 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2193,281,352 - 93,311,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DOP1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,739,401 - 7,845,309 (+)NCBI
ChlSab1.1 Ensembl137,770,658 - 7,845,005 (+)Ensembl
Dop1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479911,423,881 - 11,521,779 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016514   ⟹   ENSCLAP00000016350
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541110,838,271 - 10,905,256 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016515   ⟹   ENSCLAP00000016351
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541110,838,271 - 10,905,256 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016516   ⟹   ENSCLAP00000016352
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541110,838,543 - 10,903,368 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016517   ⟹   ENSCLAP00000016353
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541110,871,308 - 10,876,175 (+)Ensembl
RefSeq Acc Id: XM_013510756   ⟹   XP_013366210
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541110,836,060 - 10,903,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510757   ⟹   XP_013366211
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541110,836,061 - 10,903,650 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013366210 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366211 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013366210   ⟸   XM_013510756
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366211   ⟸   XM_013510757
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000016350   ⟸   ENSCLAT00000016514
RefSeq Acc Id: ENSCLAP00000016352   ⟸   ENSCLAT00000016516
RefSeq Acc Id: ENSCLAP00000016351   ⟸   ENSCLAT00000016515
RefSeq Acc Id: ENSCLAP00000016353   ⟸   ENSCLAT00000016517


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011249 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016350 ENTREZGENE
  ENSCLAP00000016351 ENTREZGENE
Ensembl Transcript ENSCLAT00000016514 ENTREZGENE
  ENSCLAT00000016515 ENTREZGENE
NCBI Gene Dopey1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-19 Dop1a  DOP1 leucine zipper like protein A  Dopey1  dopey family member 1  Symbol and/or name change 5135510 APPROVED