Slc25a19 (solute carrier family 25 member 19) - Rat Genome Database

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Gene: Slc25a19 (solute carrier family 25 member 19) Chinchilla lanigera
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Symbol: Slc25a19
Name: solute carrier family 25 member 19
RGD ID: 8725008
Description: ENCODES a protein that exhibits deoxynucleotide transmembrane transporter activity (ortholog); thiamine pyrophosphate transmembrane transporter activity (ortholog); INVOLVED IN deoxynucleotide transport (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine pyrophosphate transmembrane transport (ortholog); ASSOCIATED WITH Amish Lethal Microcephaly (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial thiamine pyrophosphate carrier; solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555532,134,715 - 2,160,777 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc25a19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555532,134,715 - 2,160,777 (-)NCBIChiLan1.0ChiLan1.0
SLC25A19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,272,992 - 75,289,433 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,272,981 - 75,289,510 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,269,073 - 73,285,514 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,780,669 - 70,797,109 (-)NCBINCBI36Build 36hg18NCBI36
Build 341770,780,668 - 70,797,109NCBI
Celera1769,861,413 - 69,877,887 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,679,265 - 68,696,066 (-)NCBIHuRef
CHM1_11773,333,658 - 73,350,100 (-)NCBICHM1_1
T2T-CHM13v2.01776,165,078 - 76,181,525 (-)NCBIT2T-CHM13v2.0
Slc25a19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,504,991 - 115,519,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,505,004 - 115,519,121 (-)EnsemblGRCm39 Ensembl
GRCm3811115,614,165 - 115,628,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,614,178 - 115,628,295 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,476,297 - 115,489,453 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,431,073 - 115,444,229 (-)NCBIMGSCv36mm8
Celera11127,382,733 - 127,395,903 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Slc25a19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,353,426 - 101,366,551 (-)NCBIGRCr8
mRatBN7.210100,853,554 - 100,867,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,847,168 - 100,867,447 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,914,684 - 105,927,637 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,377,757 - 105,390,710 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,775,447 - 100,788,372 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,166,594 - 104,179,523 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,166,598 - 104,179,523 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,101,681 - 104,114,610 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,694,526 - 105,707,452 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,709,029 - 105,721,956 (-)NCBI
Celera1099,428,914 - 99,441,839 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
SLC25A19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,312,529 - 91,329,536 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,135,619 - 96,152,601 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,220,073 - 69,237,067 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,773,341 - 74,789,700 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,773,341 - 74,789,699 (-)Ensemblpanpan1.1panPan2
SLC25A19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,208,982 - 5,226,925 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,209,059 - 5,226,569 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,888,236 - 5,905,909 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,879,063 - 5,896,973 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,879,117 - 5,896,971 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,917,854 - 5,935,745 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,028,083 - 6,045,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,087,988 - 6,105,697 (+)NCBIUU_Cfam_GSD_1.0
Slc25a19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,841,303 - 5,854,135 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936594557,823 - 570,599 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,033,669 - 6,046,763 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,033,605 - 6,045,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,824,120 - 5,835,897 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,380,665 - 46,403,532 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,381,271 - 46,403,360 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,150,051 - 17,169,518 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248015,086,925 - 5,114,171 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005412291   ⟹   XP_005412348
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555532,134,715 - 2,160,760 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005412292   ⟹   XP_005412349
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555532,134,715 - 2,160,777 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508653   ⟹   XP_013364107
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555532,134,715 - 2,160,777 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412348 (Get FASTA)   NCBI Sequence Viewer  
  XP_005412349 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364107 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003742.1
RefSeq Acc Id: XP_005412349   ⟸   XM_005412292
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005412348   ⟸   XM_005412291
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013364107   ⟸   XM_013508653
- Peptide Label: isoform X1
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002668 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003818.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene Slc25a19 ENTREZGENE
Pfam Mito_carr UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A8C2YJQ7_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc25a19  solute carrier family 25 member 19    solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19  Symbol and/or name change 5135510 APPROVED