Ptpn5 (protein tyrosine phosphatase non-receptor type 5) - Rat Genome Database

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Gene: Ptpn5 (protein tyrosine phosphatase non-receptor type 5) Chinchilla lanigera
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Symbol: Ptpn5
Name: protein tyrosine phosphatase non-receptor type 5
RGD ID: 8724324
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phosphotyrosine residue binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN exploration behavior (ortholog); negative regulation of MAP kinase activity (ortholog); peptidyl-tyrosine dephosphorylation (ortholog); PARTICIPATES IN dopamine signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Hypoxia-Ischemia (ortholog); hypertrophic cardiomyopathy 12 (ortholog); FOUND IN axon (ortholog); neuronal cell body (ortholog); perikaryon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tyrosine-protein phosphatase non-receptor type 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541433,377,322 - 33,437,118 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541433,381,783 - 33,436,974 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ptpn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541433,377,322 - 33,437,118 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541433,381,783 - 33,436,974 (-)NCBIChiLan1.0ChiLan1.0
PTPN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381118,727,928 - 18,792,721 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1118,727,928 - 18,792,721 (-)EnsemblGRCh38hg38GRCh38
GRCh371118,749,475 - 18,814,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,706,051 - 18,769,965 (-)NCBINCBI36Build 36hg18NCBI36
Build 341118,706,052 - 18,769,874NCBI
Celera1118,885,312 - 18,948,746 (-)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1118,434,330 - 18,498,764 (-)NCBIHuRef
CHM1_11118,748,812 - 18,813,611 (-)NCBICHM1_1
T2T-CHM13v2.01118,825,966 - 18,890,761 (-)NCBIT2T-CHM13v2.0
Ptpn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,727,543 - 46,783,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl746,727,543 - 46,783,432 (-)EnsemblGRCm39 Ensembl
GRCm38747,077,795 - 47,134,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl747,077,795 - 47,133,684 (-)EnsemblGRCm38mm10GRCm38
MGSCv37754,333,168 - 54,389,054 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36746,945,824 - 47,001,706 (-)NCBIMGSCv36mm8
Celera742,560,280 - 42,616,180 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.7NCBI
Ptpn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81106,756,896 - 106,817,369 (-)NCBIGRCr8
mRatBN7.2197,620,638 - 97,681,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl197,620,642 - 97,679,882 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1103,010,604 - 103,069,779 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01111,482,589 - 111,541,753 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01104,768,970 - 104,828,192 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01103,197,918 - 103,258,309 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1103,197,915 - 103,256,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01104,263,139 - 104,321,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4197,629,192 - 97,643,225 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1197,707,302 - 97,721,336 (-)NCBI
Celera191,865,125 - 91,880,882 (-)NCBICelera
Cytogenetic Map1q22NCBI
PTPN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2921,037,528 - 21,101,209 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11120,997,916 - 21,061,597 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01118,758,285 - 18,822,845 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11118,672,360 - 18,737,167 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1118,673,366 - 18,711,885 (-)Ensemblpanpan1.1panPan2
PTPN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,097,563 - 41,154,247 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,097,569 - 41,136,706 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,576,516 - 40,632,837 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02142,220,694 - 42,277,125 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,137,874 - 42,277,086 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,223,899 - 41,280,192 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,401,047 - 41,457,402 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02141,778,556 - 41,834,892 (-)NCBIUU_Cfam_GSD_1.0
Ptpn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494744,491,082 - 44,552,326 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936528525,769 - 586,327 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936528523,884 - 586,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl240,459,049 - 40,521,461 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1240,458,865 - 40,521,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2243,468,196 - 43,530,692 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1146,134,109 - 46,197,246 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl146,153,340 - 46,199,002 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038143,475,470 - 143,539,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptpn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476610,147,840 - 10,204,238 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476610,147,859 - 10,204,657 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024119   ⟹   ENSCLAP00000023893
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541433,377,322 - 33,437,118 (-)Ensembl
RefSeq Acc Id: XM_005380426   ⟹   XP_005380483
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541433,381,783 - 33,436,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512076   ⟹   XP_013367530
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541433,381,783 - 33,436,974 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380483 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367530 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023893
  ENSCLAP00000023893.1
RefSeq Acc Id: XP_005380483   ⟸   XM_005380426
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W8T4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367530   ⟸   XM_013512076
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000023893   ⟸   ENSCLAT00000024119
Protein Domains
Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016396 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024119 ENTREZGENE
  ENSCLAT00000024119.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
InterPro Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTP_cat UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
  Tyr_Pase_KIM-con UniProtKB/TrEMBL
  Tyr_Pase_rcpt_R/non-rcpt_5 UniProtKB/TrEMBL
NCBI Gene Ptpn5 ENTREZGENE
PANTHER PTHR46198 UniProtKB/TrEMBL
  TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 5 UniProtKB/TrEMBL
Pfam Y_phosphatase UniProtKB/TrEMBL
PIRSF PTPRR UniProtKB/TrEMBL
PRINTS KIMPTPASE UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2W8T4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 Ptpn5  protein tyrosine phosphatase non-receptor type 5    protein tyrosine phosphatase, non-receptor type 5  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ptpn5  protein tyrosine phosphatase, non-receptor type 5    protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)  Symbol and/or name change 5135510 APPROVED