Rc3h1 (ring finger and CCCH-type domains 1) - Rat Genome Database

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Gene: Rc3h1 (ring finger and CCCH-type domains 1) Chinchilla lanigera
Analyze
Symbol: Rc3h1
Name: ring finger and CCCH-type domains 1
RGD ID: 8722519
Description: ENCODES a protein that exhibits CCR4-NOT complex binding (ortholog); double-stranded RNA binding (ortholog); miRNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); B cell homeostasis (ortholog); lymph node development (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); autoimmune lymphoproliferative syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); P-body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: roquin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540614,053,122 - 14,123,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540614,053,122 - 14,123,023 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rc3h1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540614,053,122 - 14,123,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540614,053,122 - 14,123,023 (-)NCBIChiLan1.0ChiLan1.0
RC3H1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381173,931,084 - 174,022,357 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1173,931,084 - 174,022,357 (-)EnsemblGRCh38hg38GRCh38
GRCh371173,900,222 - 173,991,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,166,975 - 172,228,833 (-)NCBINCBI36Build 36hg18NCBI36
Celera1147,009,820 - 147,071,680 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1145,125,474 - 145,187,339 (-)NCBIHuRef
CHM1_11175,322,816 - 175,384,658 (-)NCBICHM1_1
T2T-CHM13v2.01173,289,302 - 173,380,330 (-)NCBIT2T-CHM13v2.0
Rc3h1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,733,981 - 160,802,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,733,988 - 160,802,548 (+)EnsemblGRCm39 Ensembl
GRCm381160,906,411 - 160,974,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,906,418 - 160,974,978 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,836,542 - 162,905,107 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,743,147 - 162,804,531 (+)NCBIMGSCv36mm8
Celera1163,345,875 - 163,414,502 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.75NCBI
Rc3h1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81375,707,098 - 75,779,114 (+)NCBIGRCr8
mRatBN7.21373,174,075 - 73,245,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1373,173,946 - 73,238,839 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01378,723,028 - 78,794,663 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,722,763 - 78,789,266 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01383,619,665 - 83,689,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41376,493,343 - 76,530,107 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1372,962,695 - 73,034,187 (+)NCBICelera
Cytogenetic Map13q22NCBI
RC3H1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2175,698,811 - 75,794,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1175,372,872 - 75,468,532 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01149,454,748 - 149,539,566 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11153,153,048 - 153,213,402 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1153,160,661 - 153,213,402 (-)Ensemblpanpan1.1panPan2
RC3H1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1725,265,836 - 25,312,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl725,233,235 - 25,305,174 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha724,766,202 - 24,845,548 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0724,983,310 - 25,063,044 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl724,983,031 - 25,055,836 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1724,903,636 - 24,982,946 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0724,985,200 - 25,064,573 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0725,130,410 - 25,209,772 (+)NCBIUU_Cfam_GSD_1.0
Rc3h1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934496,072,540 - 96,127,125 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648113,919,257 - 13,966,677 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648113,919,006 - 13,973,868 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RC3H1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9116,208,799 - 116,292,381 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19116,204,807 - 116,292,455 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29127,839,470 - 127,927,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103230557
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12555,167,418 - 55,258,964 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2555,167,077 - 55,279,088 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236664807,917 - 55,965 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rc3h1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247717,837,547 - 7,948,217 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016546   ⟹   ENSCLAP00000016382
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540614,053,122 - 14,123,029 (-)Ensembl
RefSeq Acc Id: XM_005374881   ⟹   XP_005374938
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540614,053,122 - 14,123,023 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374883   ⟹   XP_005374940
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540614,053,122 - 14,123,023 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374938 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374940 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016382
  ENSCLAP00000016382.1
Reference Protein Sequences
RefSeq Acc Id: XP_005374938   ⟸   XM_005374881
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VIW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374940   ⟸   XM_005374883
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000016382   ⟸   ENSCLAT00000016546
Protein Domains
C3H1-type   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011267 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016546 ENTREZGENE
  ENSCLAT00000016546.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1790 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro ROQ_II UniProtKB/TrEMBL
  Roquin_1_2-like_ROQ UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene Rc3h1 ENTREZGENE
PANTHER PTHR13139:SF6 UniProtKB/TrEMBL
  RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam ROQ_II UniProtKB/TrEMBL
  Roquin_1_2-like_ROQ UniProtKB/TrEMBL
  zf-RING_5 UniProtKB/TrEMBL
PROSITE ZF_C3H1 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF90229 UniProtKB/TrEMBL
UniProt A0A8C2VIW8 ENTREZGENE, UniProtKB/TrEMBL