Il17rd (interleukin 17 receptor D) - Rat Genome Database

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Gene: Il17rd (interleukin 17 receptor D) Chinchilla lanigera
Analyze
Symbol: Il17rd
Name: interleukin 17 receptor D
RGD ID: 8720467
Description: INVOLVED IN negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); arteriovenous malformations of the brain (ortholog); Brain Injuries (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-17 receptor D
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554306,848,820 - 6,898,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554306,842,756 - 6,873,195 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Il17rd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554306,848,820 - 6,898,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554306,842,756 - 6,873,195 (-)NCBIChiLan1.0ChiLan1.0
IL17RD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38357,089,982 - 57,170,317 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl357,089,982 - 57,170,306 (-)EnsemblGRCh38hg38GRCh38
GRCh37357,124,010 - 57,204,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36357,099,050 - 57,179,374 (-)NCBINCBI36Build 36hg18NCBI36
Build 34357,103,317 - 57,179,353NCBI
Celera357,089,588 - 57,164,961 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef357,172,083 - 57,248,123 (-)NCBIHuRef
CHM1_1357,074,359 - 57,149,632 (-)NCBICHM1_1
T2T-CHM13v2.0357,130,265 - 57,210,589 (-)NCBIT2T-CHM13v2.0
Il17rd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391426,760,990 - 26,829,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1426,760,898 - 26,829,243 (+)EnsemblGRCm39 Ensembl
GRCm381427,038,964 - 27,107,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1427,038,941 - 27,107,286 (+)EnsemblGRCm38mm10GRCm38
MGSCv371427,852,187 - 27,920,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361425,865,966 - 25,929,393 (+)NCBIMGSCv36mm8
Celera1423,308,506 - 23,339,406 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.09NCBI
Il17rd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,235,172 - 2,489,827 (+)NCBIGRCr8
mRatBN7.2162,228,438 - 2,295,122 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,228,287 - 2,292,556 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,235,197 - 2,296,128 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,380,882 - 3,441,821 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,241,373 - 2,302,260 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0162,670,471 - 2,737,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl162,670,618 - 2,731,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,642,868 - 2,709,804 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,291,838 - 2,354,927 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera162,194,794 - 2,255,588 (+)NCBICelera
Cytogenetic Map16p16NCBI
IL17RD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2257,069,376 - 57,145,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1357,074,147 - 57,149,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0357,023,622 - 57,098,869 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1358,234,422 - 58,309,480 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl358,240,835 - 58,309,409 (-)Ensemblpanpan1.1panPan2
IL17RD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,240,728 - 33,306,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,240,767 - 33,303,404 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,168,071 - 33,234,132 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02033,512,962 - 33,579,003 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2033,513,011 - 33,579,087 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12032,961,714 - 33,027,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,320,255 - 33,386,452 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02033,491,831 - 33,557,800 (+)NCBIUU_Cfam_GSD_1.0
Il17rd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118174,303,076 - 174,369,286 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364737,447,292 - 7,507,830 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364737,447,292 - 7,507,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17RD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1338,939,316 - 39,006,690 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11338,935,631 - 39,006,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21342,822,716 - 42,917,594 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL17RD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12218,416,143 - 18,489,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2218,416,443 - 18,434,271 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041148,380,962 - 148,449,510 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il17rd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822150,992 - 214,107 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822150,955 - 219,939 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005927   ⟹   ENSCLAP00000005826
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554306,848,820 - 6,898,704 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005928   ⟹   ENSCLAP00000005827
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554306,848,820 - 6,873,897 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005929   ⟹   ENSCLAP00000005828
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554306,848,820 - 6,873,897 (-)Ensembl
RefSeq Acc Id: XM_013515704   ⟹   XP_013371158
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554306,842,756 - 6,873,195 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013371158 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005826
  ENSCLAP00000005826.1
  ENSCLAP00000005827.1
  ENSCLAP00000005828.1
Reference Protein Sequences
RefSeq Acc Id: XP_013371158   ⟸   XM_013515704
- UniProtKB: A0A8C2UU39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005828   ⟸   ENSCLAT00000005929
RefSeq Acc Id: ENSCLAP00000005827   ⟸   ENSCLAT00000005928
RefSeq Acc Id: ENSCLAP00000005826   ⟸   ENSCLAT00000005927
Protein Domains
SEFIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004131 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005927 ENTREZGENE
  ENSCLAT00000005927.1 UniProtKB/TrEMBL
  ENSCLAT00000005928.1 UniProtKB/TrEMBL
  ENSCLAT00000005929.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11530 UniProtKB/TrEMBL
InterPro IL-17_rcpt-like UniProtKB/TrEMBL
  IL17R_D_N UniProtKB/TrEMBL
  SEFIR_dom UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/TrEMBL
NCBI Gene Il17rd ENTREZGENE
PANTHER INTERLEUKIN-17 RECEPTOR D UniProtKB/TrEMBL
  PTHR15583 UniProtKB/TrEMBL
Pfam IL17R_D_N UniProtKB/TrEMBL
  SEFIR UniProtKB/TrEMBL
PROSITE SEFIR UniProtKB/TrEMBL
Superfamily-SCOP SSF52200 UniProtKB/TrEMBL
UniProt A0A8C2UU33_CHILA UniProtKB/TrEMBL
  A0A8C2UU39 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UZ66_CHILA UniProtKB/TrEMBL