Lratd2 (LRAT domain containing 2) - Rat Genome Database

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Gene: Lratd2 (LRAT domain containing 2) Chinchilla lanigera
Analyze
Symbol: Lratd2
Name: LRAT domain containing 2
RGD ID: 8718303
Description: ASSOCIATED WITH genetic disease (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam84b; family with sequence similarity 84 member B; family with sequence similarity 84, member B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554611,626,560 - 1,627,495 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554611,623,114 - 1,627,515 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Lratd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554611,626,560 - 1,627,495 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554611,623,114 - 1,627,515 (-)NCBIChiLan1.0ChiLan1.0
LRATD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388126,552,443 - 126,558,478 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8126,552,443 - 126,558,478 (-)EnsemblGRCh38hg38GRCh38
GRCh378127,564,688 - 127,570,723 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368127,633,869 - 127,639,648 (-)NCBINCBI36Build 36hg18NCBI36
Celera8123,744,691 - 123,750,470 (-)NCBICelera
Cytogenetic Map8q24.21NCBI
HuRef8122,881,757 - 122,887,785 (-)NCBIHuRef
CHM1_18127,604,964 - 127,610,992 (-)NCBICHM1_1
T2T-CHM13v2.08127,679,604 - 127,685,649 (-)NCBIT2T-CHM13v2.0
Lratd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391560,690,845 - 60,697,954 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1560,690,843 - 60,725,627 (-)EnsemblGRCm39 Ensembl
GRCm381560,818,996 - 60,826,105 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1560,818,994 - 60,853,778 (-)EnsemblGRCm38mm10GRCm38
MGSCv371560,650,551 - 60,656,635 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361560,648,999 - 60,652,116 (-)NCBIMGSCv36mm8
Celera1562,334,714 - 62,340,798 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.7NCBI
Lratd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8794,270,753 - 94,276,445 (-)NCBIGRCr8
mRatBN7.2792,376,713 - 92,387,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl792,362,194 - 92,388,189 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx794,221,841 - 94,227,533 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0796,423,007 - 96,428,699 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0796,311,303 - 96,316,995 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07101,138,188 - 101,142,123 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7101,139,376 - 101,140,308 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07101,706,470 - 101,710,643 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4797,686,396 - 97,688,774 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera789,099,897 - 89,102,093 (-)NCBICelera
Cytogenetic Map7q33NCBI
LRATD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27143,955,114 - 143,960,740 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18119,465,423 - 119,471,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08123,216,937 - 123,222,960 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18125,965,364 - 125,971,383 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8125,969,376 - 125,970,308 (-)Ensemblpanpan1.1panPan2
LRATD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11324,213,085 - 24,217,588 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1324,185,118 - 24,191,368 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01324,558,048 - 24,564,352 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1324,558,401 - 24,562,940 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11324,280,287 - 24,286,530 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01324,385,481 - 24,391,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01324,637,006 - 24,643,286 (-)NCBIUU_Cfam_GSD_1.0
Lratd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530314,006,407 - 14,130,300 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647021,440,008 - 21,444,454 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647021,439,925 - 21,445,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRATD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl413,445,309 - 13,451,322 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1413,445,283 - 13,451,329 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2413,883,537 - 13,887,194 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRATD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18121,130,097 - 121,136,257 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8121,134,166 - 121,135,098 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603919,022,821 - 19,028,901 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lratd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473528,826,523 - 28,831,317 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473528,826,119 - 28,831,317 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025686   ⟹   ENSCLAP00000025431
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554611,626,560 - 1,627,495 (-)Ensembl
RefSeq Acc Id: XM_013521345   ⟹   XP_013376799
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554611,623,114 - 1,627,515 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376799 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025431
  ENSCLAP00000025431.1
Reference Protein Sequences
RefSeq Acc Id: XP_013376799   ⟸   XM_013521345
- UniProtKB: A0A8C2WA26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025431   ⟸   ENSCLAT00000025686
Protein Domains
LRAT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017512 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025686 ENTREZGENE
  ENSCLAT00000025686.1 UniProtKB/TrEMBL
Gene3D-CATH endopeptidase domain like (from Nostoc punctiforme) UniProtKB/TrEMBL
InterPro LRAT_dom UniProtKB/TrEMBL
  LRATD1_LRATD2 UniProtKB/TrEMBL
NCBI Gene Fam84b ENTREZGENE
PANTHER PTHR46341 UniProtKB/TrEMBL
  PTHR46341:SF2 UniProtKB/TrEMBL
Pfam LRAT UniProtKB/TrEMBL
PROSITE LRAT UniProtKB/TrEMBL
UniProt A0A8C2WA26 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-05 Lratd2  LRAT domain containing 2  Fam84b  family with sequence similarity 84 member B  Symbol and/or name change 5135510 APPROVED
2016-08-16 Fam84b  family with sequence similarity 84 member B    family with sequence similarity 84, member B  Symbol and/or name change 5135510 APPROVED