Galc (galactosylceramidase) - Rat Genome Database

Name: Galc
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Galc (galactosylceramidase) Chinchilla lanigera

Analyze

Symbol:

Galc

Name:

galactosylceramidase

RGD ID:

8718278

Description:

ENCODES a protein that exhibits galactosylceramidase activity (ortholog); INVOLVED IN galactosylceramide catabolic process (ortholog); myelination (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Creutzfeldt-Jakob disease (ortholog); epilepsy (ortholog); Experimental Liver Cirrhosis (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

galactocerebrosidase

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GALC (galactosylceramidase)	NCBI	Ortholog
Mus musculus (house mouse):	Galc (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Galc (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Galc (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GALC (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Galc (galactosylceramidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	10,667,807 - 10,704,384 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	10,667,807 - 10,704,386 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Creutzfeldt-Jakob disease (ISO)

epilepsy (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Krabbe disease (ISO)

Leber congenital amaurosis 3 (ISO)

leukodystrophy (ISO)

Mycoplasma pneumoniae pneumonia (ISO)

Nervous System Malformations (ISO)

spastic ataxia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

galactosylceramide catabolic process (ISO)

myelination (ISO)

Molecular Function

galactosylceramidase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Fabry disease pathway (ISO)

Gaucher's disease pathway (ISO)

Krabbe disease pathway (ISO)

metachromatic leukodystrophy pathway (ISO)

sphingolipid metabolic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Galc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	10,667,807 - 10,704,384 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	10,667,807 - 10,704,386 (-)	NCBI	ChiLan1.0	ChiLan1.0

GALC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	87,933,014 - 87,993,667 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	87,837,820 - 87,993,665 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	88,399,358 - 88,460,009 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	87,469,111 - 87,529,660 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	87,469,112 - 87,529,596	NCBI
Celera	14	68,445,026 - 68,505,593 (-)	NCBI		Celera
Cytogenetic Map	14	q31.3	NCBI
HuRef	14	68,569,486 - 68,630,135 (-)	NCBI		HuRef
CHM1_1	14	88,337,479 - 88,398,139 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	82,153,629 - 82,214,299 (-)	NCBI		T2T-CHM13v2.0

Galc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	98,168,543 - 98,226,565 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	98,168,553 - 98,225,718 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	98,202,287 - 98,259,459 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	98,202,294 - 98,259,459 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	99,440,510 - 99,497,547 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	98,603,350 - 98,660,387 (-)	NCBI		MGSCv36	mm8
Celera	12	99,428,771 - 99,484,984 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	49.83	NCBI

Galc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	123,182,636 - 123,252,024 (-)	NCBI		GRCr8
mRatBN7.2	6	117,452,888 - 117,522,281 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	117,452,895 - 117,515,830 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	117,607,772 - 117,669,061 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	117,904,558 - 117,965,859 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	117,239,449 - 117,300,736 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	122,177,195 - 122,239,411 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	122,178,602 - 122,239,614 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	131,392,298 - 131,454,514 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	122,355,659 - 122,416,986 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	122,359,405 - 122,420,733 (-)	NCBI
Celera	6	115,018,409 - 115,078,607 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

GALC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	89,071,492 - 89,132,963 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	88,287,998 - 88,349,469 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	68,545,070 - 68,605,730 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	87,905,098 - 87,965,769 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	87,905,098 - 87,965,770 (-)	Ensembl	panpan1.1		panPan2

GALC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	59,266,693 - 59,324,825 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	59,267,818 - 59,324,967 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	58,846,151 - 58,903,131 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	59,531,522 - 59,589,663 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	59,531,533 - 59,589,716 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	59,214,260 - 59,271,257 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	59,260,650 - 59,317,658 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	59,594,667 - 59,651,690 (-)	NCBI		UU_Cfam_GSD_1.0

Galc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	16,532,259 - 16,624,784 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	15,444,801 - 15,518,856 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	15,444,184 - 15,519,395 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	109,894,578 - 109,961,413 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	109,894,576 - 109,961,407 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	116,348,927 - 116,415,759 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	65,556,763 - 65,621,693 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	65,558,074 - 65,621,258 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	52,874,548 - 52,988,107 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Galc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	14,355,435 - 14,407,087 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	14,355,349 - 14,462,869 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005390247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013517231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01035214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01007063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000017118 ⟹ ENSCLAP00000016952

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955438	10,667,807 - 10,704,384 (-)	Ensembl

RefSeq Acc Id:

XM_005390247 ⟹ XP_005390304

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955438	10,667,807 - 10,704,384 (-)	NCBI

Sequence:

show sequence

CTCCCTGGGTGCCGGAGTCATGTGACCTACACAATGGTCGGGGGTGCACTGGAGGCGTCCAGGC
AACGCGGAGTGGAAGTTATGACGGCTGCCGCGGGTTCGGCTGGCCGCACCTCAGTGTCCCTGCT
GCTGTGTGCGCTGCTGGCATCCGGCGGCGCCTACGTGCTGGACGACTCCGGCGGGCTGGGCCGG
GAGTTCGACGGCATCGGCGCGGTCAGCGGCGGCGGGGCCACCTCCCGACTTCTAGTAAATTACC
CAGAGCCCCATCGTTCTGAAATATTGGATTTTCTCTTTAAGCCAAACTTTGGTGCCTCTTTGCA
TATTCTAAAAGTTGAAATAGGTGGTGACGGGCAGACAACAGATGGCACTGAACCTTCCCACATG
CACTATGCACTAGATGAGAATTTTTTTCGGGGGTATGAGTGGTGGTTAATGAAGGAAGCTAAGA
AGAGGAACCCCAATATTATACTTATGGGGTTACCATGGTCATTCCCTGGATGGCTGGGAAAAGG
TTTCAACTGGCCTTACGTAAATGTTCAGCTGACTGCCTACTACGTTGTGAGCTGGATTTTGGGC
GCCAAGCATTATCATGATTTGAACATAGATTATATTGGAATTTGGAATGAAAGGACATTTGATA
CCAGCTACATAAAGGTATTAAGGAAGATGCTGGACTCTCAAGGTCTCCAGGGAGTGAAAATCAT
AGCAAGTGATAATCTGTGGGAACCCATTTCGTCATTTATGCTGCAGGACCCTGATCTCTTTGAA
GTGATTGATGTTATTGGGGCCCATTATCCAGGCACCCATGTATCACTGCATGCAAAGATGACCC
ACAAGAAACTTTGGTCTTCTGAAGATTTTAGCACTTTTAATAGTGACGTGGGTGCAGGCTGTTG
GGGACGCATATTAAATCAGAATTACGTCAATGGCAATATGACGTCCACAATCGCTTGGAATTTG
GTGGCTAGTTATTATGAAGAGTTGCCTTATGGGCGATGTGGATTGATGACCGCCCAGGAGCCAT
GGAGTGGGCATTATGTAGTAGAATCTCCTATCTGGGTATCAGCTCATACAACTCAGTTCACTCA
ACCAGGTTGGTATTACCTGAAGACCGTGGGCCATTTAGAGAAAGGAGGAAGCTACGTAGCTCTG
ACTGATGGCTTAGGTAACCTCACTATCATCGTTGAAACTATGAGTCACAGCCATTCTAAGTGTA
TTCGGCCATTCCTTCCTTTTTACAATGTGTCAGCACAGTTGGCTACCTTTGTTCTTAAGGGATC
TTTTAGTGGAATACCAGAGCTACAGATGTGGTATACCAAACTCGGAGAGCCATCTGAGAGAGTT
CTTTTTAAACAACTGGATTCTCTATGGCTCCTTGACAGCAATGGCACTTTCACACTGGAACTGC
AAGAGGATGAGCTGTTTACACTCACTACCCTCCCCACAGGTCGCAAAGGAAGCTACCCACTGCC
TCCCAAATCCCAGCCTTTCCCGCCTGTCTATAAGGATAATTTCAATGTCGATTACCCATTTTTT
AGTGAAGCTCCGAATTTTGCTGACCAGACTGGTGTGTTTGAGTACTACATGAACCCCGAGGACC
CGGGGGAGCACCGCTTCACTCTGCGCCAGGTTCTCAACCAGCGCCCTATTACTTGGGCTGCGGA
TGCGTCCAGCCCGATCAGCATCATAGGAGACTACCAGTGGACCAATTTGACTATAAGCTGTGAT
GTTTACATAGAGACGCCTGAGAAGGGAGGTGTATTCATCGCAGGAAGAGTAAACAAAGGCGGTC
TTTTGGTTAGAATTGCGCAGGGAGTTTTCTTCTGGATTTTTACAAACGGATTGTACAGAGTTAC
GGGTGATCTGGCTGGATGGATCGTATACTCTTCAGGATATGTTGAAGTGACAGCAAAAAAATGG
TACACACTTACGTTAACAATTGAGGGTCACTTATCTTCTGGCAAGTTGAACGGCAAGGTTCTGT
GGGAAAACATCCATGTGAAATACCCGAAGAATGGCTGGGCTGCGATTGGAACTCAATCGTTCGA
ATTCGCACAGTTTGACAACTTTCATGTGGAAGTCATGCGCTAAGACGGAGTGTTAGAGAACACT
CCTGATTATCTTCCTTTTGGACTTGGTTTAGAGCCGATTCTTGTGTTGACAGATTGATAGACGA
GCCTTTGGAGGCTAAAAGCAAGGAAGAGTATCTGGGAAGAAAGATGTATTTTTACTTGATCCTG
AGAAAGGTTTTATTAGAAATAATTCCAAAGGAATGTGAATTGTTAATATTATCTGGTGTGTCTC
TTAAAATTCAGACTCCTCATTGGTCCTGTGTTCAAGAGTGATTCAGATCTCGAAGCCGTCTTGC
GAATACTGAGGTAGATCTCTTATTTGCAGAAGGACTGTACAGGTGGCCATGACTAACCTCACTG
AGATGTGTTCGTGAGATTCTCCATGTGTCCAAGCCATGTCCTTGTCATAGGATGATGCTACCGC
AGAGGAAGCTGAGGACATAAAGTGCTGCTTTGTGAAAACCATTTCATCATGCTACCCTTACATT
CTAACAAGTGTCTTTTTTAAAAATTTTTAAGATGATGGTTTTGAATGATGAATAGGATGATTTG
AAAAATGCCTCTTTATTAAACTACCTCTAATGTTATTTCTGCAACAATAAATTGTAGCAAATTA
A

hide sequence

RefSeq Acc Id:

XM_013517230 ⟹ XP_013372684

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955438	10,667,807 - 10,704,386 (-)	NCBI

Sequence:

show sequence

GCCTCCCTGGGTGCCGGAGTCATGTGACCTACACAATGGTCGGGGGTGCACTGGAGGCGTCCAG
GCAACGCGGAGTGGAAGTTATGACGGCTGCCGCGGGTTCGGCTGGCCGCACCTCAGTGTCCCTG
CTGCTGTGTGCGCTGCTGGCATCCGGCGGCGCCTACGTGCTGGACGACTCCGGCGGGCTGGGCC
GGGAGTTCGACGGCATCGGCGCGGTCAGCGGCGGCGGGGCCACCTCCCGACTTCTAGTAAATTA
CCCAGAGCCCCATCGTTCTGAAATATTGGATTTTCTCTTTAAGCCAAACTTTGGTGCCTCTTTG
CATATTCTAAAAGTTGAAATAGGTGGTGACGGGCAGACAACAGATGGCACTGAACCTTCCCACA
TGCACTATGCACTAGATGAGAATTTTTTTCGGGGGTATGAGTGGTGGTTAATGAAGGAAGCTAA
GAAGAGGAACCCCAATATTATACTTATGGGGTTACCATGGTCATTCCCTGGATGGCTGGGAAAA
GGTTTCAACTGGCCTTACGTAAATGTTCAGCTGACTGCCTACTACGTTGTGAGCTGGATTTTGG
GCGCCAAGCATTATCATGATTTGAACATAGATTATATTGGAATTTGGAATGAAAGGACATTTGA
TACCAGCTACATAAAGGTATTAAGGAAGATGCTGGACTCTCAAGGTCTCCAGGGAGTGAAAATC
ATAGCAAGTGATAATCTGTGGGAACCCATTTCGTCATTTATGCTGCAGGACCCTGATCTCTTTG
AAGTGATTGATGTTATTGGGGCCCATTATCCAGGCACCCATGTATCACTGCATGCAAAGATGAC
CCACAAGAAACTTTGGTCTTCTGAAGATTTTAGCACTTTTAATAGTGACGTGGGTGCAGGCTGT
TGGGGACGCATATTAAATCAGAATTACGTCAATGGCAATATGACGTCCACAATCGCTTGGAATT
TGGTGGCTAGTTATTATGAAGAGTTGCCTTATGGGCGATGTGGATTGATGACCGCCCAGGAGCC
ATGGAGTGGGCATTATGTAGTAGAATCTCCTATCTGGGTATCAGCTCATACAACTCAGTTCACT
CAACCAGGTTGGTATTACCTGAAGACCGTGGGCCATTTAGAGAAAGGAGGAAGCTACGTAGCTC
TGACTGATGGCTTAGGTAACCTCACTATCATCGTTGAAACTATGAGTGGAATACCAGAGCTACA
GATGTGGTATACCAAACTCGGAGAGCCATCTGAGAGAGTTCTTTTTAAACAACTGGATTCTCTA
TGGCTCCTTGACAGCAATGGCACTTTCACACTGGAACTGCAAGAGGATGAGCTGTTTACACTCA
CTACCCTCCCCACAGGTCGCAAAGGAAGCTACCCACTGCCTCCCAAATCCCAGCCTTTCCCGCC
TGTCTATAAGGATAATTTCAATGTCGATTACCCATTTTTTAGTGAAGCTCCGAATTTTGCTGAC
CAGACTGGTGTGTTTGAGTACTACATGAACCCCGAGGACCCGGGGGAGCACCGCTTCACTCTGC
GCCAGGTTCTCAACCAGCGCCCTATTACTTGGGCTGCGGATGCGTCCAGCCCGATCAGCATCAT
AGGAGACTACCAGTGGACCAATTTGACTATAAGCTGTGATGTTTACATAGAGACGCCTGAGAAG
GGAGGTGTATTCATCGCAGGAAGAGTAAACAAAGGCGGTCTTTTGGTTAGAATTGCGCAGGGAG
TTTTCTTCTGGATTTTTACAAACGGATTGTACAGAGTTACGGGTGATCTGGCTGGATGGATCGT
ATACTCTTCAGGATATGTTGAAGTGACAGCAAAAAAATGGTACACACTTACGTTAACAATTGAG
GGTCACTTATCTTCTGGCAAGTTGAACGGCAAGGTTCTGTGGGAAAACATCCATGTGAAATACC
CGAAGAATGGCTGGGCTGCGATTGGAACTCAATCGTTCGAATTCGCACAGTTTGACAACTTTCA
TGTGGAAGTCATGCGCTAAGACGGAGTGTTAGAGAACACTCCTGATTATCTTCCTTTTGGACTT
GGTTTAGAGCCGATTCTTGTGTTGACAGATTGATAGACGAGCCTTTGGAGGCTAAAAGCAAGGA
AGAGTATCTGGGAAGAAAGATGTATTTTTACTTGATCCTGAGAAAGGTTTTATTAGAAATAATT
CCAAAGGAATGTGAATTGTTAATATTATCTGGTGTGTCTCTTAAAATTCAGACTCCTCATTGGT
CCTGTGTTCAAGAGTGATTCAGATCTCGAAGCCGTCTTGCGAATACTGAGGTAGATCTCTTATT
TGCAGAAGGACTGTACAGGTGGCCATGACTAACCTCACTGAGATGTGTTCGTGAGATTCTCCAT
GTGTCCAAGCCATGTCCTTGTCATAGGATGATGCTACCGCAGAGGAAGCTGAGGACATAAAGTG
CTGCTTTGTGAAAACCATTTCATCATGCTACCCTTACATTCTAACAAGTGTCTTTTTTAAAAAT
TTTTAAGATGATGGTTTTGAATGATGAATAGGATGATTTGAAAAATGCCTCTTTATTAAACTAC
CTCTAATGTTATTTCTGCAACAATAAATTGTAGCAAATTAA

hide sequence

RefSeq Acc Id:

XM_013517231 ⟹ XP_013372685

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955438	10,667,807 - 10,704,385 (-)	NCBI

Sequence:

show sequence

CCTCCCTGGGTGCCGGAGTCATGTGACCTACACAATGGTCGGGGGTGCACTGGAGGCGTCCAGG
CAACGCGGAGTGGAAGTTATGACGGCTGCCGCGGGTTCGGCTGGCCGCACCTCAGTGTCCCTGC
TGCTGTGTGCGCTGCTGGCATCCGGCGGCGCCTACGTGCTGGACGACTCCGGCGGGCTGGGCCG
GGAGTTCGACGGCATCGGCGCGGTCAGCGGCGGCGGGGCCACCTCCCGACTTCTAGTAAATTAC
CCAGAGCCCCATCGTTCTGAAATATTGGATTTTCTCTTTAAGCCAAACTTTGGTGCCTCTTTGC
ATATTCTAAAAGTTGAAATAGGTGGTGACGGGCAGACAACAGATGGCACTGAACCTTCCCACAT
GCACTATGCACTAGATGAGAATTTTTTTCGGGGGTATGAGTGGTGGTTAATGAAGGAAGCTAAG
AAGAGGAACCCCAATATTATACTTATGGGGTTACCATGGTCATTCCCTGGATGGCTGGGAAAAG
GTTTCAACTGGCCTTACGTAAATGTTCAGCTGACTGCCTACTACGTTGTGAGCTGGATTTTGGG
CGCCAAGCATTATCATGATTTGAACATAGATTATATTGGAATTTGGAATGAAAGGACATTTGAT
ACCAGCTACATAAAGGTATTAAGGAAGATGCTGGACTCTCAAGGTCTCCAGGGAGTGAAAATCA
TAGCAAGTGATAATCTGTGGGAACCCATTTCGTCATTTATGCTGCAGGACCCTGATCTCTTTGA
AGTGATTGATGTTATTGGCACAATCGCTTGGAATTTGGTGGCTAGTTATTATGAAGAGTTGCCT
TATGGGCGATGTGGATTGATGACCGCCCAGGAGCCATGGAGTGGGCATTATGTAGTAGAATCTC
CTATCTGGGTATCAGCTCATACAACTCAGTTCACTCAACCAGGTTGGTATTACCTGAAGACCGT
GGGCCATTTAGAGAAAGGAGGAAGCTACGTAGCTCTGACTGATGGCTTAGGTAACCTCACTATC
ATCGTTGAAACTATGAGTCACAGCCATTCTAAGTGTATTCGGCCATTCCTTCCTTTTTACAATG
TGTCAGCACAGTTGGCTACCTTTGTTCTTAAGGGATCTTTTAGTGGAATACCAGAGCTACAGAT
GTGGTATACCAAACTCGGAGAGCCATCTGAGAGAGTTCTTTTTAAACAACTGGATTCTCTATGG
CTCCTTGACAGCAATGGCACTTTCACACTGGAACTGCAAGAGGATGAGCTGTTTACACTCACTA
CCCTCCCCACAGGTCGCAAAGGAAGCTACCCACTGCCTCCCAAATCCCAGCCTTTCCCGCCTGT
CTATAAGGATAATTTCAATGTCGATTACCCATTTTTTAGTGAAGCTCCGAATTTTGCTGACCAG
ACTGGTGTGTTTGAGTACTACATGAACCCCGAGGACCCGGGGGAGCACCGCTTCACTCTGCGCC
AGGTTCTCAACCAGCGCCCTATTACTTGGGCTGCGGATGCGTCCAGCCCGATCAGCATCATAGG
AGACTACCAGTGGACCAATTTGACTATAAGCTGTGATGTTTACATAGAGACGCCTGAGAAGGGA
GGTGTATTCATCGCAGGAAGAGTAAACAAAGGCGGTCTTTTGGTTAGAATTGCGCAGGGAGTTT
TCTTCTGGATTTTTACAAACGGATTGTACAGAGTTACGGGTGATCTGGCTGGATGGATCGTATA
CTCTTCAGGATATGTTGAAGTGACAGCAAAAAAATGGTACACACTTACGTTAACAATTGAGGGT
CACTTATCTTCTGGCAAGTTGAACGGCAAGGTTCTGTGGGAAAACATCCATGTGAAATACCCGA
AGAATGGCTGGGCTGCGATTGGAACTCAATCGTTCGAATTCGCACAGTTTGACAACTTTCATGT
GGAAGTCATGCGCTAAGACGGAGTGTTAGAGAACACTCCTGATTATCTTCCTTTTGGACTTGGT
TTAGAGCCGATTCTTGTGTTGACAGATTGATAGACGAGCCTTTGGAGGCTAAAAGCAAGGAAGA
GTATCTGGGAAGAAAGATGTATTTTTACTTGATCCTGAGAAAGGTTTTATTAGAAATAATTCCA
AAGGAATGTGAATTGTTAATATTATCTGGTGTGTCTCTTAAAATTCAGACTCCTCATTGGTCCT
GTGTTCAAGAGTGATTCAGATCTCGAAGCCGTCTTGCGAATACTGAGGTAGATCTCTTATTTGC
AGAAGGACTGTACAGGTGGCCATGACTAACCTCACTGAGATGTGTTCGTGAGATTCTCCATGTG
TCCAAGCCATGTCCTTGTCATAGGATGATGCTACCGCAGAGGAAGCTGAGGACATAAAGTGCTG
CTTTGTGAAAACCATTTCATCATGCTACCCTTACATTCTAACAAGTGTCTTTTTTAAAAATTTT
TAAGATGATGGTTTTGAATGATGAATAGGATGATTTGAAAAATGCCTCTTTATTAAACTACCTC
TAATGTTATTTCTGCAACAATAAATTGTAGCAAATTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005390304	(Get FASTA)	NCBI Sequence Viewer
	XP_013372684	(Get FASTA)	NCBI Sequence Viewer
	XP_013372685	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000016952
	ENSCLAP00000016952.1

RefSeq Acc Id:	XP_005390304 ⟸ XM_005390247
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VMJ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGGALEASRQRGVEVMTAAAGSAGRTSVSLLLCALLASGGAYVLDDSGGLGREFDGIGAVSGG GATSRLLVNYPEPHRSEILDFLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYALDENFFRG YEWWLMKEAKKRNPNIILMGLPWSFPGWLGKGFNWPYVNVQLTAYYVVSWILGAKHYHDLNIDY IGIWNERTFDTSYIKVLRKMLDSQGLQGVKIIASDNLWEPISSFMLQDPDLFEVIDVIGAHYPG THVSLHAKMTHKKLWSSEDFSTFNSDVGAGCWGRILNQNYVNGNMTSTIAWNLVASYYEELPYG RCGLMTAQEPWSGHYVVESPIWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIV ETMSHSHSKCIRPFLPFYNVSAQLATFVLKGSFSGIPELQMWYTKLGEPSERVLFKQLDSLWLL DSNGTFTLELQEDELFTLTTLPTGRKGSYPLPPKSQPFPPVYKDNFNVDYPFFSEAPNFADQTG VFEYYMNPEDPGEHRFTLRQVLNQRPITWAADASSPISIIGDYQWTNLTISCDVYIETPEKGGV FIAGRVNKGGLLVRIAQGVFFWIFTNGLYRVTGDLAGWIVYSSGYVEVTAKKWYTLTLTIEGHL SSGKLNGKVLWENIHVKYPKNGWAAIGTQSFEFAQFDNFHVEVMR hide sequence

RefSeq Acc Id:

XP_013372684 ⟸ XM_013517230

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVGGALEASRQRGVEVMTAAAGSAGRTSVSLLLCALLASGGAYVLDDSGGLGREFDGIGAVSGG
GATSRLLVNYPEPHRSEILDFLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYALDENFFRG
YEWWLMKEAKKRNPNIILMGLPWSFPGWLGKGFNWPYVNVQLTAYYVVSWILGAKHYHDLNIDY
IGIWNERTFDTSYIKVLRKMLDSQGLQGVKIIASDNLWEPISSFMLQDPDLFEVIDVIGAHYPG
THVSLHAKMTHKKLWSSEDFSTFNSDVGAGCWGRILNQNYVNGNMTSTIAWNLVASYYEELPYG
RCGLMTAQEPWSGHYVVESPIWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIV
ETMSGIPELQMWYTKLGEPSERVLFKQLDSLWLLDSNGTFTLELQEDELFTLTTLPTGRKGSYP
LPPKSQPFPPVYKDNFNVDYPFFSEAPNFADQTGVFEYYMNPEDPGEHRFTLRQVLNQRPITWA
ADASSPISIIGDYQWTNLTISCDVYIETPEKGGVFIAGRVNKGGLLVRIAQGVFFWIFTNGLYR
VTGDLAGWIVYSSGYVEVTAKKWYTLTLTIEGHLSSGKLNGKVLWENIHVKYPKNGWAAIGTQS
FEFAQFDNFHVEVMR

hide sequence

RefSeq Acc Id:

XP_013372685 ⟸ XM_013517231

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVGGALEASRQRGVEVMTAAAGSAGRTSVSLLLCALLASGGAYVLDDSGGLGREFDGIGAVSGG
GATSRLLVNYPEPHRSEILDFLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYALDENFFRG
YEWWLMKEAKKRNPNIILMGLPWSFPGWLGKGFNWPYVNVQLTAYYVVSWILGAKHYHDLNIDY
IGIWNERTFDTSYIKVLRKMLDSQGLQGVKIIASDNLWEPISSFMLQDPDLFEVIDVIGTIAWN
LVASYYEELPYGRCGLMTAQEPWSGHYVVESPIWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVA
LTDGLGNLTIIVETMSHSHSKCIRPFLPFYNVSAQLATFVLKGSFSGIPELQMWYTKLGEPSER
VLFKQLDSLWLLDSNGTFTLELQEDELFTLTTLPTGRKGSYPLPPKSQPFPPVYKDNFNVDYPF
FSEAPNFADQTGVFEYYMNPEDPGEHRFTLRQVLNQRPITWAADASSPISIIGDYQWTNLTISC
DVYIETPEKGGVFIAGRVNKGGLLVRIAQGVFFWIFTNGLYRVTGDLAGWIVYSSGYVEVTAKK
WYTLTLTIEGHLSSGKLNGKVLWENIHVKYPKNGWAAIGTQSFEFAQFDNFHVEVMR

hide sequence

RefSeq Acc Id:

ENSCLAP00000016952 ⟸ ENSCLAT00000017118

Protein Domains

Glycosyl hydrolase family 59 C-terminal lectin Glycosyl hydrolase family 59 catalytic Glycosyl hydrolase family 59 central

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000011636	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000017118	ENTREZGENE
	ENSCLAT00000017118.1	UniProtKB/TrEMBL
Gene3D-CATH	3.20.20.70	UniProtKB/TrEMBL
	Glycosidases	UniProtKB/TrEMBL
InterPro	Aldolase_TIM	UniProtKB/TrEMBL
	GH59_C	UniProtKB/TrEMBL
	GH59_cat	UniProtKB/TrEMBL
	Glyco_hydro_59	UniProtKB/TrEMBL
	Glyco_hydro_59_dom	UniProtKB/TrEMBL
	Glycoside_hydrolase_SF	UniProtKB/TrEMBL
NCBI Gene	Galc	ENTREZGENE
PANTHER	GALACTOCEREBROSIDASE	UniProtKB/TrEMBL
	PTHR15172	UniProtKB/TrEMBL
Pfam	Glyco_hydro_59	UniProtKB/TrEMBL
	Glyco_hydro_59_C	UniProtKB/TrEMBL
	Glyco_hydro_59M	UniProtKB/TrEMBL
PRINTS	GLHYDRLASE59	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51445	UniProtKB/TrEMBL
UniProt	A0A8C2VMJ0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB