Cd47 (CD47 molecule) - Rat Genome Database

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Gene: Cd47 (CD47 molecule) Chinchilla lanigera
Analyze
Symbol: Cd47
Name: CD47 molecule
RGD ID: 8716765
Description: ENCODES a protein that exhibits cell-cell adhesion mediator activity (ortholog); protein binding involved in heterotypic cell-cell adhesion (ortholog); thrombospondin receptor activity (ortholog); INVOLVED IN ATP export (ortholog); cell migration (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); extracellular exosome (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leukocyte surface antigen CD47
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554278,704,519 - 8,740,962 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cd47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554278,704,519 - 8,740,962 (-)NCBIChiLan1.0ChiLan1.0
CD47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383108,043,091 - 108,091,031 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3108,043,091 - 108,091,862 (-)EnsemblGRCh38hg38GRCh38
GRCh373107,761,938 - 107,809,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363109,244,631 - 109,292,625 (-)NCBINCBI36Build 36hg18NCBI36
Build 343109,244,836 - 109,292,592NCBI
Celera3106,158,598 - 106,206,555 (-)NCBICelera
Cytogenetic Map3q13.12NCBI
HuRef3105,135,236 - 105,183,196 (-)NCBIHuRef
CHM1_13107,726,104 - 107,774,070 (-)NCBICHM1_1
T2T-CHM13v2.03110,762,913 - 110,810,821 (-)NCBIT2T-CHM13v2.0
Cd47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391649,671,691 - 49,732,799 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1649,620,896 - 49,735,373 (+)EnsemblGRCm39 Ensembl
GRCm381649,851,328 - 49,912,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1649,800,533 - 49,915,010 (+)EnsemblGRCm38mm10GRCm38
MGSCv371649,855,767 - 49,911,801 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361649,775,280 - 49,831,314 (+)NCBIMGSCv36mm8
Celera1650,198,659 - 50,254,756 (+)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1631.23NCBI
Cd47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81164,374,816 - 64,438,763 (-)NCBIGRCr8
mRatBN7.21150,906,052 - 50,970,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1150,906,177 - 50,969,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1159,678,059 - 59,738,347 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01152,339,783 - 52,400,067 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01151,467,423 - 51,527,814 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01153,511,485 - 53,575,754 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1153,514,595 - 53,575,175 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01156,677,247 - 56,739,505 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41152,098,355 - 52,158,169 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11152,155,955 - 52,215,758 (-)NCBI
Celera1150,551,511 - 50,611,556 (-)NCBICelera
Cytogenetic Map11q21NCBI
CD47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22106,021,081 - 106,069,020 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13106,025,859 - 106,073,254 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03105,170,246 - 105,217,603 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13112,104,037 - 112,140,818 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3112,104,037 - 112,143,522 (-)Ensemblpanpan1.1panPan2
CD47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13313,315,984 - 13,362,971 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3313,319,266 - 13,363,580 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3313,425,087 - 13,468,588 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03313,485,123 - 13,528,697 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3313,481,404 - 13,528,744 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13313,354,729 - 13,398,227 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03313,420,284 - 13,463,780 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03313,832,991 - 13,876,700 (-)NCBIUU_Cfam_GSD_1.0
LOC101967799
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602141,436,987 - 141,483,915 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366451,363,406 - 1,408,624 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13151,429,288 - 151,488,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113151,427,933 - 151,488,064 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213160,472,681 - 160,518,106 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12272,702,236 - 72,749,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2272,702,324 - 72,751,887 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604193,741,579 - 93,790,134 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013515051   ⟹   XP_013370505
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554278,704,519 - 8,740,962 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370505 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013342.1
Reference Protein Sequences
RefSeq Acc Id: XP_013370505   ⟸   XM_013515051
- Sequence:
Protein Domains
CD47 immunoglobulin-like   CD47-like transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009218 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013494.1 UniProtKB/TrEMBL
InterPro CD47 UniProtKB/TrEMBL
  CD47_TM UniProtKB/TrEMBL
  CD47_Vset UniProtKB/TrEMBL
NCBI Gene Cd47 ENTREZGENE
PANTHER LEUKOCYTE SURFACE ANTIGEN CD47 UniProtKB/TrEMBL
  PTHR10613 UniProtKB/TrEMBL
Pfam CD47 UniProtKB/TrEMBL
  V-set_CD47 UniProtKB/TrEMBL
UniProt A0A8C2VC18_CHILA UniProtKB/TrEMBL