Pigf (phosphatidylinositol glycan anchor biosynthesis class F) - Rat Genome Database

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Gene: Pigf (phosphatidylinositol glycan anchor biosynthesis class F) Chinchilla lanigera
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Symbol: Pigf
Name: phosphatidylinositol glycan anchor biosynthesis class F
RGD ID: 8716732
Description: INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH SHORT STATURE WITH MICROCEPHALY AND DISTINCTIVE FACIES (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: phosphatidylinositol glycan anchor biosynthesis, class F
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544113,492,334 - 13,525,581 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Pigf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544113,492,334 - 13,525,581 (-)NCBIChiLan1.0ChiLan1.0
PIGF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl246,580,937 - 46,617,055 (-)EnsemblGRCh38hg38GRCh38
GRCh38246,580,937 - 46,617,057 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37246,808,076 - 46,844,180 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36246,661,917 - 46,697,755 (-)NCBINCBI36hg18NCBI36
Build 34246,720,066 - 46,755,855NCBI
Celera246,647,088 - 46,682,932 (-)NCBI
Cytogenetic Map2p21NCBI
HuRef246,545,829 - 46,581,678 (-)NCBIHuRef
CHM1_1246,738,704 - 46,774,545 (-)NCBICHM1_1
Pigf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,304,684 - 87,332,975 (-)NCBIGRCm39mm39
GRCm39 Ensembl1787,304,684 - 87,332,834 (-)Ensembl
GRCm381786,997,259 - 87,025,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1786,997,256 - 87,025,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv371787,396,599 - 87,424,741 (-)NCBIGRCm37mm9NCBIm37
MGSCv361786,905,585 - 86,933,727 (-)NCBImm8
Celera1791,376,256 - 91,402,912 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1756.9NCBI
Pigf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.267,589,528 - 7,617,721 (+)NCBI
Rnor_6.0 Ensembl610,568,614 - 10,592,454 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0610,565,841 - 10,593,972 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0620,554,358 - 20,582,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4610,446,734 - 10,474,805 (-)NCBIRGSC3.4rn4RGSC3.4
Celera67,325,024 - 7,353,152 (+)NCBICelera
Cytogenetic Map6q12NCBI
PIGF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A47,627,376 - 47,663,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A47,627,376 - 47,663,272 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A46,696,543 - 46,732,625 (-)NCBIMhudiblu_PPA_v0panPan3
PIGF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11048,804,226 - 48,840,188 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1048,718,482 - 48,840,074 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1048,658,441 - 48,694,179 (-)NCBI
ROS_Cfam_1.01049,675,215 - 49,711,194 (-)NCBI
UMICH_Zoey_3.11049,383,207 - 49,419,084 (-)NCBI
UNSW_CanFamBas_1.01049,673,490 - 49,709,226 (-)NCBI
UU_Cfam_GSD_1.01049,856,593 - 49,892,361 (-)NCBI
Pigf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629234,159,334 - 34,266,826 (+)NCBI
SpeTri2.0NW_0049365085,659,059 - 5,695,441 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,925,881 - 93,973,528 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,925,886 - 93,973,531 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23100,009,993 - 100,057,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGF
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11460,573,240 - 60,608,796 (+)NCBI
ChlSab1.1 Ensembl1460,572,815 - 60,611,085 (+)Ensembl
Vero_WHO_p1.0NW_02366604551,236,373 - 51,272,460 (-)NCBI
Pigf
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473828,031,839 - 28,069,409 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005390976   ⟹   XP_005391033
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,492,334 - 13,525,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390977   ⟹   XP_005391034
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,492,334 - 13,525,388 (-)NCBI
Sequence:
RefSeq Acc Id: XR_262076
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,492,557 - 13,525,581 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391033 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391034 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005391033   ⟸   XM_005390976
- Sequence:
RefSeq Acc Id: XP_005391034   ⟸   XM_005390977
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009602 ENTREZGENE
Ensembl Protein ENSCLAP00000013881 ENTREZGENE
Ensembl Transcript ENSCLAT00000014037 ENTREZGENE
NCBI Gene Pigf ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Pigf  phosphatidylinositol glycan anchor biosynthesis class F    phosphatidylinositol glycan anchor biosynthesis, class F  Symbol and/or name change 5135510 APPROVED