Pigf (phosphatidylinositol glycan anchor biosynthesis class F) - Rat Genome Database

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Gene: Pigf (phosphatidylinositol glycan anchor biosynthesis class F) Chinchilla lanigera
Analyze
Symbol: Pigf
Name: phosphatidylinositol glycan anchor biosynthesis class F
RGD ID: 8716732
Description: INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Lynch syndrome (ortholog); ONYCHODYSTROPHY, OSTEODYSTROPHY, IMPAIRED INTELLECTUAL DEVELOPMENT, AND SEIZURES SYNDROME (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositol glycan anchor biosynthesis, class F
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544113,492,334 - 13,525,581 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Pigf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544113,492,334 - 13,525,581 (-)NCBIChiLan1.0ChiLan1.0
PIGF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38246,580,937 - 46,617,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl246,580,937 - 46,617,055 (-)EnsemblGRCh38hg38GRCh38
GRCh37246,808,076 - 46,844,180 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36246,661,917 - 46,697,755 (-)NCBINCBI36Build 36hg18NCBI36
Build 34246,720,066 - 46,755,855NCBI
Celera246,647,088 - 46,682,932 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef246,545,829 - 46,581,678 (-)NCBIHuRef
CHM1_1246,738,704 - 46,774,545 (-)NCBICHM1_1
T2T-CHM13v2.0246,585,925 - 46,622,034 (-)NCBIT2T-CHM13v2.0
Pigf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,304,686 - 87,332,972 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1787,304,684 - 87,332,834 (-)EnsemblGRCm39 Ensembl
GRCm381786,997,259 - 87,025,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1786,997,256 - 87,025,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv371787,396,599 - 87,424,741 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361786,905,585 - 86,933,727 (-)NCBIMGSCv36mm8
Celera1791,376,256 - 91,402,912 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1756.9NCBI
Pigf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8613,343,134 - 13,371,237 (+)NCBIGRCr8
mRatBN7.267,589,584 - 7,617,719 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl67,589,570 - 7,639,675 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx67,868,090 - 7,896,258 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.068,177,503 - 8,205,671 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.067,704,617 - 7,732,785 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0610,565,841 - 10,593,972 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl610,568,614 - 10,592,454 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0620,554,358 - 20,582,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4610,446,734 - 10,474,805 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera67,325,024 - 7,353,152 (+)NCBICelera
Cytogenetic Map6q12NCBI
PIGF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21279,773,197 - 79,809,034 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A79,777,165 - 79,813,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A46,696,543 - 46,732,625 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A47,627,376 - 47,663,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A47,627,376 - 47,663,272 (-)Ensemblpanpan1.1panPan2
PIGF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11048,804,226 - 48,840,188 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1048,718,482 - 48,840,074 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1048,658,441 - 48,694,179 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01049,675,215 - 49,711,194 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1049,675,215 - 49,711,080 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11049,383,207 - 49,419,084 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01049,673,490 - 49,709,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01049,856,593 - 49,892,361 (-)NCBIUU_Cfam_GSD_1.0
Pigf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629234,159,334 - 34,266,826 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365085,659,059 - 5,695,441 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,925,881 - 93,973,528 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,925,886 - 93,973,531 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23100,009,993 - 100,057,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11460,573,240 - 60,608,796 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1460,572,815 - 60,611,085 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604551,236,373 - 51,272,460 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473828,031,839 - 28,069,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005390976   ⟹   XP_005391033
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,492,334 - 13,525,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390977   ⟹   XP_005391034
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,492,334 - 13,525,388 (-)NCBI
Sequence:
RefSeq Acc Id: XR_262076
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,492,557 - 13,525,581 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391033 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013881
  ENSCLAP00000013881.1
Reference Protein Sequences
RefSeq Acc Id: XP_005391033   ⟸   XM_005390976
- UniProtKB: A0A8C2VIP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391034   ⟸   XM_005390977
- UniProtKB: A0A8C2VIP6 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009602 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014037 ENTREZGENE
  ENSCLAT00000014037.1 UniProtKB/TrEMBL
InterPro GPI_biosynthesis_protein_Pig-F UniProtKB/TrEMBL
NCBI Gene Pigf ENTREZGENE
Pfam PIG-F UniProtKB/TrEMBL
UniProt A0A8C2VIP6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Pigf  phosphatidylinositol glycan anchor biosynthesis class F    phosphatidylinositol glycan anchor biosynthesis, class F  Symbol and/or name change 5135510 APPROVED