Iqck (IQ motif containing K) - Rat Genome Database

Name: Iqck
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Iqck (IQ motif containing K) Chinchilla lanigera

Analyze

Symbol:

Iqck

Name:

IQ motif containing K

RGD ID:

8716171

Description:

ASSOCIATED WITH Alzheimer's disease (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

IQ domain-containing protein K

RGD Orthologs

Alliance Genes

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IQCK (IQ motif containing K)	NCBI	Ortholog
Mus musculus (house mouse):	Iqck (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Iqck (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IQCK (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IQCK (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Iqck (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IQCK (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IQCK (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Iqck (IQ motif containing K)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	3,428,259 - 3,519,014 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	3,428,245 - 3,548,718 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

genetic disease (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Iqck
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	3,428,259 - 3,519,014 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	3,428,245 - 3,548,718 (+)	NCBI	ChiLan1.0	ChiLan1.0

IQCK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	19,718,271 - 19,858,467 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	19,716,456 - 19,858,467 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	19,729,593 - 19,869,789 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	19,635,279 - 19,776,362 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	18,876,739 - 19,017,806 (+)	NCBI		Celera
Cytogenetic Map	16	p12.3	NCBI
HuRef	16	18,264,271 - 18,405,443 (+)	NCBI		HuRef
CHM1_1	16	19,815,022 - 19,956,144 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	19,649,074 - 19,789,259 (+)	NCBI		T2T-CHM13v2.0

Iqck
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	118,454,975 - 118,571,343 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	118,454,975 - 118,571,875 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	118,855,752 - 118,972,120 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	118,855,752 - 118,972,652 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	125,999,289 - 126,116,166 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	125,999,289 - 126,116,166 (+)	NCBI		MGSCv36	mm8
Celera	7	118,808,488 - 118,919,056 (+)	NCBI		Celera
Cytogenetic Map	7	F2	NCBI
cM Map	7	63.67	NCBI

Iqck
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	182,630,678 - 182,748,325 (+)	NCBI		GRCr8
mRatBN7.2	1	173,199,308 - 173,316,982 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	173,199,316 - 173,316,984 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	181,509,759 - 181,627,404 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	188,695,870 - 188,813,516 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	181,426,336 - 181,545,914 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	188,571,930 - 188,690,184 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	188,571,953 - 188,688,700 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	195,514,680 - 195,634,082 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	177,110,765 - 177,196,009 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	170,963,563 - 171,080,873 (+)	NCBI		Celera
Cytogenetic Map	1	q35	NCBI

IQCK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	20,982,679 - 21,123,997 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	25,504,006 - 25,645,652 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	18,453,328 - 18,594,566 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	19,817,406 - 19,958,187 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	19,817,406 - 19,958,187 (+)	Ensembl	panpan1.1		panPan2

IQCK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	25,435,813 - 25,564,663 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	25,436,642 - 25,564,607 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	26,797,826 - 26,927,693 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	25,589,180 - 25,719,366 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	25,589,807 - 25,719,335 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	25,389,517 - 25,519,463 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	25,284,760 - 25,414,918 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	25,673,178 - 25,803,522 (-)	NCBI		UU_Cfam_GSD_1.0

Iqck
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	117,244,427 - 117,365,014 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	5,341,738 - 5,462,097 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	5,342,269 - 5,465,804 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IQCK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	25,897,555 - 26,022,064 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	25,897,287 - 26,022,123 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

IQCK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	18,003,668 - 18,138,635 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	11,786,178 - 11,923,761 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Iqck
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	3,035,476 - 3,121,072 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	3,035,519 - 3,163,275 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005391117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01037506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01037507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01043787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000023129 ⟹ ENSCLAP00000022915

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955442	3,428,259 - 3,519,014 (+)	Ensembl

RefSeq Acc Id:

XM_005391117 ⟹ XP_005391174

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955442	3,428,245 - 3,548,718 (+)	NCBI

Sequence:

show sequence

CGGTAACGGCAACCATGGCGGCCGCACGGCAGTTCTCTAGTCGTACGGTCCAGCGTGAGGACCC
CACAGGCTCTTCGGACTCATTGGTCACCACCCTGAACTCCGTGCCCACTGTGTCTCCAGTGTCT
CCCGAGCCTGTCTCCCCGGGACAGGTCGCGGAGCCACCAGACAAAAACCTGTGGGAGCAGATCT
GTGAGGAATATGAAGCTGAGCTGCCTCAGTTTCCAGAAGGCTATATGATCAGACAAGAAACTCC
AGTTACTGTTTCACTATTGGAGGAACTGGTTTCCCATGACTTCAACACAGAACACTATTTCCTA
GCTTCCCATTCCACCACCGCCTCAAAAGCACCTTGTCCTCCAAATAAATCTGAAACAGTTGATC
CAAAAACATGTTCTCCTAGACAATATTTGGAAACGTTCATCTTCCCAGTTCTGCTTCCTGGAAT
GGCCAGCCTACTTCACCAAGCAAGACAAGAAAAGTGTTTTGAGAGGAAAAGAACCAAATTCATT
GCCTGTGATTTTCTGACTGAGTGGTTATACAACCAAAATCCAAAGAGGGCAGGGGAACCGTTCA
CAGAATTCTTCTCCATCCCATGTGTGGAGGAATGGCTAATGCACAACCCGCGGCCACCAATCCC
ACTCTCCCTCCTACTGACAGAAGAGGAAGCAGTGATTATCATACAGTCCTTCTGGAGAGGCTAT
CTGGTTCGCTGTGATCCCGAGATTCAAGAACTGCGTCAGTGGCAGAAGAAACTCCGGGAGGACA
AGCACATTCACCAGCGAGTGCAAATGTTCTGGGCCAACCAAGAACAAAAAGTGAAATGCAAAAT
GGAGGACCAAGAGGAATGGAACCCAGGGCCTTATGGTGTGTGGTAGGGAAGAGTTCCACCACTG
AGCTATACACACCTTAGCTCAAACAAGACATTTAAACCCAGATGTCAGTCATTAAGAGTTTTTG
TTGTCTAGGTCCCACAGTATTACAGAAAGTTCCTGCTTTTTTGGCTAAATCAACTTATGACTCT
CATTTGTTCTGCAGTTTGCAGTTAGGCAGGATTCTCCCATTCACAATGCTGCAGATGCGGCCAA
AAGCCTAGGAGCAGGATAGAGTTGTTTTGACAAGCTACCACACGTCTTAAGTAAATAGTAAAGC
CTTTATTTTTTGTGTTAAGAACAGCATTTTGAAAATAAACCTATCTGCTCATGCTTAACAACCT
TTTAAATCTGTAATATTTATGTACAGTCATGTATGGTACACATTGATTGTCTTGAAATTTCTGA
ATGATTTTTTTATAAGTATGCAAGTCAGCCAGGGGAAGATAAAGGTACATTATAAAACACACAT
TAATACATTTAATAAATATATATTATCTATCAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005391174	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022915
	ENSCLAP00000022915.1

RefSeq Acc Id:

XP_005391174 ⟸ XM_005391117

- UniProtKB:

A0A8C2YTV2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAARQFSSRTVQREDPTGSSDSLVTTLNSVPTVSPVSPEPVSPGQVAEPPDKNLWEQICEEYE
AELPQFPEGYMIRQETPVTVSLLEELVSHDFNTEHYFLASHSTTASKAPCPPNKSETVDPKTCS
PRQYLETFIFPVLLPGMASLLHQARQEKCFERKRTKFIACDFLTEWLYNQNPKRAGEPFTEFFS
IPCVEEWLMHNPRPPIPLSLLLTEEEAVIIIQSFWRGYLVRCDPEIQELRQWQKKLREDKHIHQ
RVQMFWANQEQKVKCKMEDQEEWNPGPYGVW

hide sequence

RefSeq Acc Id:

ENSCLAP00000022915 ⟸ ENSCLAT00000023129

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015720	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000023129	ENTREZGENE
	ENSCLAT00000023129.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.190	UniProtKB/TrEMBL
InterPro	IQ_motif_EF-hand-BS	UniProtKB/TrEMBL
	IQCK	UniProtKB/TrEMBL
NCBI Gene	Iqck	ENTREZGENE
PANTHER	IQ DOMAIN-CONTAINING PROTEIN K	UniProtKB/TrEMBL
	PTHR34927	UniProtKB/TrEMBL
Pfam	PF00612	UniProtKB/TrEMBL
PROSITE	PS50096	UniProtKB/TrEMBL
SMART	SM00015	UniProtKB/TrEMBL
UniProt	A0A8C2YTV2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD