LOC102004351 (NADH-cytochrome b5 reductase 1)

Gene: LOC102004351 (NADH-cytochrome b5 reductase 1) Chinchilla lanigera

Analyze

Symbol:

LOC102004351 (Ensembl: CYB5R1)

Name:

NADH-cytochrome b5 reductase 1

RGD ID:

8715985

Description:

ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	38,955,997 - 38,965,127 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	38,958,766 - 38,964,597 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adult myoclonic epilepsy 5 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Hypokalemic Periodic Paralysis, Type 1 (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (ISO)

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC102004351
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	38,955,997 - 38,965,127 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	38,958,766 - 38,964,597 (-)	NCBI	ChiLan1.0	ChiLan1.0

CYB5R1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	202,961,873 - 202,967,257 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	202,961,873 - 202,967,275 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	202,931,001 - 202,936,385 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	201,197,624 - 201,203,027 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	199,662,660 - 199,668,061	NCBI
Celera	1	176,060,247 - 176,065,650 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	ENTREZGENE
HuRef	1	174,096,692 - 174,102,062 (-)	NCBI		HuRef
CHM1_1	1	204,353,240 - 204,358,642 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	202,224,599 - 202,229,982 (-)	NCBI		T2T-CHM13v2.0

Cyb5r1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	134,333,519 - 134,339,476 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	134,333,297 - 134,339,478 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	134,405,781 - 134,411,738 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	134,405,559 - 134,411,740 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	136,302,567 - 136,308,315 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	136,222,401 - 136,228,149 (+)	NCBI		MGSCv36	mm8
Celera	1	137,012,972 - 137,018,722 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	58.21	NCBI

Cyb5r1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	48,401,061 - 48,407,466 (+)	NCBI		GRCr8
mRatBN7.2	13	45,849,017 - 45,855,458 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,849,091 - 45,855,458 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	48,456,333 - 48,462,746 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,744,401 - 49,750,816 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	47,009,283 - 47,015,699 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	51,229,697 - 51,236,447 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,229,890 - 51,236,463 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	56,286,655 - 56,293,107 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,347,756 - 47,354,161 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	47,361,798 - 47,368,203 (+)	NCBI
Celera	13	46,177,040 - 46,183,445 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

LOC100967245
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	46,410,785 - 46,416,239 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	46,377,829 - 46,383,261 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	178,563,539 - 178,568,997 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	182,858,966 - 182,864,381 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	182,858,966 - 182,864,381 (-)	Ensembl	panpan1.1		panPan2

CYB5R1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	232,280 - 237,496 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	232,098 - 237,031 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	289,882 - 292,411 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	242,003 - 247,223 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	242,023 - 247,220 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	233,378 - 235,907 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	342,440 - 344,977 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	365,428 - 367,957 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101966914
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	72,415,587 - 72,421,490 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	1,650,255 - 1,656,683 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	1,650,304 - 1,655,618 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CYB5R1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	24,925,410 - 24,931,917 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	24,926,167 - 24,931,772 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	29,284,348 - 29,289,916 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CYB5R1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	26,437,439 - 26,442,851 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	26,437,334 - 26,444,110 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	27,214,111 - 27,219,539 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101709232
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	7,886,558 - 7,892,903 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	7,887,415 - 7,892,667 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005375237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01006614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01276274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000014661 ⟹ ENSCLAP00000014503

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955406	38,955,997 - 38,965,127 (-)	Ensembl

RefSeq Acc Id:

XM_005375237 ⟹ XP_005375294

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	38,958,766 - 38,964,597 (-)	NCBI

Sequence:

show sequence

AGGTTCTGGGTTAGAATGGCATTCTCGTCTGGTGATAGGTGGATCGAAGTGACGGGAACCGGAA
GACTGGAGAGGGCTGGAGCTGCGGTCTTAAAAGGTCTTGGAAAAGTGCGAGAAATCCTGGGCCA
GTGGGTGGCGGAGTCAGGAGTGAAAAGGACTGGACCGAGAAGTAGCGGGCCCCGCCCACGACCG
CGCCCCGCCCCGCCCCTGGGTGGCCCCGCCCCCGCCCCGCCCCGCGGCGCATTGTGGGATCTGT
CTTGCCGCCGGGTGCTGGAGGACACGCGCTTGGTCATGGGGATACATCCGAGCTCAATCCTGCT
GGCCTCGCTGGGGGTGGGGGTGCTTACTCTGCTCGGCGTGGCTGTGGGCACTTACTTGGTGCGA
AGGTCCCGCCGGCCACTGGTCACTCTTCTGGACCCCAACGAAAAGTACCTGCTGCGACTCCTGG
ACAAGACGACTGTGAGCCACAACACCAAGAGGTTCCGCTTTGCCCTGCCCACCGCCCACCACGT
TCTGGGGCTGCCTGTGGGCAAACATGTCTACCTCTCTGCCCGAATTGATGGCAGCTTGGTCATC
CGGCCATACACTCCTGTCACCAGTGATGAGGACCGAGGCTACGTGGATCTTGTTGTCAAGGTCT
ACCTGAAGGGTGTGCACCCCAAGTTTCCTGAGGGAGGGAAGATGTCTCAGTACCTGGATAGCCT
GAAGACTGGGGACGTGGTGGAGTTCCGGGGCCCGAGCGGGTTGCTCACTTACACTGGGAAAGGG
AATTTTAACATTCAGCCCAACAAGAAATCTCCACCAGAGCCCCGAGTGGCAAAGAAACTGGGAA
TGATTGCTGGAGGGACAGGAATAACCCCAATGCTACAGCTGATCCGGGCCATCCTGAAAGTCCC
TGAAGATCCAACCCAGTGCTTTCTGCTTTTTGCCAACCAGACTGAACAGGACATAATCCTGCGG
GAGGACTTGGAGGAACTGCAGGCCCAATATCCCAGTCGCTTTAAGCTCTGGTTCACGCTGGACC
ATCCCCCAGCAGGTTGGGCCTACAGCAAGGGCTTTGTGACTGCTGACATGATCCGGGAGCACCT
GCCTGCCCCAGGGGATGATGTGCTGGTGCTGCTCTGCGGGCCACCCCCAATGGTACAGCTGGCC
TGCCATCCCAACCTGGACAAACTGGGCTACTCACAAAAGATGCGATTTACCTACTGAGCGTCCC
CTAGTCCCCTGGACCCGTGTCTGCAACTATCCTCCAGTGCTCAAATACTATGAGCTATAGATTC
CTTTCCTGAAAGGTCCGTTTCGCAATTTGCTCAGGAGCTAACAGTGGCCAGCACTCTGAAGTCA
CAGAAAAGGGCCAAGACTGAGGCGTTCCCGGCAAGGCCCCACATCTCCCTGTGGTGAAGGGCCC
AGGTGAAGCCCATGGAGAAGTGTCCCCCCTGGGGTCAGAGAGAAGGGAGCATGCACGTTTGTTC
TAAGTCTGGCTCATTCCTTGATAGTATCACACTTGACCTCCTTTGTGTCTGTAATGAAAGGAAT
GCAGAGTTTTACTTAATAGTCAGTATTTAACCCACAGGCAAATTCTGTTTATGTGACTGCAAGT
TGAGTGGACCTACAGAGGTAGTTTTATAGAGATATGAAATTGTTTCTTCAGAACTCCAGACCAC
AGAGAAAGGAGTCTGAAATATATTTTCATGCGTCTCTCTCTCTTGGCTGCTGCCCAGATTAGAG
GGAAAGGGCTACCCACAACCTAAAACTGCTGCTCATACCAGGAACCTCTGGCTATTCAAATAAA
TGGGGCTGAGGCCCCAGTGTGATACCTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005375294	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014503.1

RefSeq Acc Id:

XP_005375294 ⟸ XM_005375237

- Sequence:

show sequence

MAFSSGDRWIEVTGTGRLERAGAAVLKGLGKVREILGQWVAESGVKRTGPRSSGPRPRPRPAPP
LGGPAPAPPRGALWDLSCRRVLEDTRLVMGIHPSSILLASLGVGVLTLLGVAVGTYLVRRSRRP
LVTLLDPNEKYLLRLLDKTTVSHNTKRFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTP
VTSDEDRGYVDLVVKVYLKGVHPKFPEGGKMSQYLDSLKTGDVVEFRGPSGLLTYTGKGNFNIQ
PNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEQDIILREDLEE
LQAQYPSRFKLWFTLDHPPAGWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNL
DKLGYSQKMRFTY

hide sequence

RefSeq Acc Id:

ENSCLAP00000014503 ⟸ ENSCLAT00000014661

Protein Domains

FAD-binding FR-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000010011	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000014661.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.80	UniProtKB/TrEMBL
	Translation factors	UniProtKB/TrEMBL
InterPro	CBR-like	UniProtKB/TrEMBL
	Cbr1-like_FAD-bd_dom	UniProtKB/TrEMBL
	FAD-bd_FR_type	UniProtKB/TrEMBL
	Flavoprot_Pyr_Nucl_cyt_Rdtase	UniProtKB/TrEMBL
	FNR_nucleotide-bd	UniProtKB/TrEMBL
	OxRdtase_FAD/NAD-bd	UniProtKB/TrEMBL
	Riboflavin_synthase-like_b-brl	UniProtKB/TrEMBL
NCBI Gene	LOC102004351	ENTREZGENE
PANTHER	NADH-CYTOCHROME B5 REDUCTASE 1	UniProtKB/TrEMBL
	PTHR19370	UniProtKB/TrEMBL
Pfam	FAD_binding_6	UniProtKB/TrEMBL
	NAD_binding_1	UniProtKB/TrEMBL
PRINTS	CYTB5RDTASE	UniProtKB/TrEMBL
	FPNCR	UniProtKB/TrEMBL
PROSITE	FAD_FR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52343	UniProtKB/TrEMBL
	SSF63380	UniProtKB/TrEMBL
UniProt	A0A8C2VLA5_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	LOC102004351	NADH-cytochrome b5 reductase 1		NADH-cytochrome b5 reductase 1-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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