Dtna (dystrobrevin alpha) - Rat Genome Database

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Gene: Dtna (dystrobrevin alpha) Chinchilla lanigera
Analyze
Symbol: Dtna
Name: dystrobrevin alpha
RGD ID: 8714999
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); phosphatase binding (ortholog); ASSOCIATED WITH Cardiac Arrhythmias (ortholog); cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); FOUND IN axon (ortholog); cell junction (ortholog); cell projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dystrobrevin, alpha
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540221,315,889 - 21,673,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540221,414,122 - 21,676,389 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dtna
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540221,315,889 - 21,673,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540221,414,122 - 21,676,389 (+)NCBIChiLan1.0ChiLan1.0
DTNA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381834,493,312 - 34,891,844 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1834,493,291 - 34,891,844 (+)EnsemblGRCh38hg38GRCh38
GRCh371832,073,276 - 32,471,808 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361830,327,279 - 30,725,364 (+)NCBINCBI36Build 36hg18NCBI36
Build 341830,652,329 - 30,701,367NCBI
Celera1828,881,475 - 29,280,096 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
HuRef1828,932,326 - 29,330,662 (+)NCBIHuRef
CHM1_11832,000,280 - 32,398,881 (+)NCBICHM1_1
T2T-CHM13v2.01834,685,119 - 35,083,714 (+)NCBIT2T-CHM13v2.0
Dtna
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391823,443,063 - 23,792,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1823,548,192 - 23,792,772 (+)EnsemblGRCm39 Ensembl
GRCm381823,310,006 - 23,659,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1823,415,135 - 23,659,715 (+)EnsemblGRCm38mm10GRCm38
MGSCv371823,573,916 - 23,818,215 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361823,558,452 - 23,802,724 (+)NCBIMGSCv36mm8
Celera1823,912,218 - 24,156,253 (+)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.08NCBI
Dtna
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81814,862,801 - 15,218,993 (+)NCBIGRCr8
mRatBN7.21814,687,193 - 14,944,232 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1814,587,852 - 14,944,261 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01814,544,725 - 14,671,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1814,471,213 - 14,657,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01814,340,984 - 14,465,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41815,024,302 - 15,571,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1814,647,976 - 14,904,179 (+)NCBICelera
Cytogenetic Map18p12NCBI
DTNA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21751,876,025 - 52,286,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11837,568,604 - 37,979,370 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01827,706,576 - 28,116,328 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11831,297,078 - 31,705,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1831,524,255 - 31,705,386 (+)Ensemblpanpan1.1panPan2
DTNA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1755,068,555 - 55,420,377 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl755,069,462 - 55,420,259 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,502,369 - 54,853,974 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0755,037,996 - 55,388,952 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl755,038,315 - 55,388,963 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,725,308 - 55,076,745 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,746,134 - 55,097,281 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0755,042,274 - 55,393,784 (-)NCBIUU_Cfam_GSD_1.0
Dtna
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,778,360 - 51,092,758 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651710,105,760 - 10,420,233 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651710,105,767 - 10,357,672 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DTNA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6118,333,733 - 118,753,512 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16118,333,069 - 118,753,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26110,934,485 - 111,005,318 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DTNA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,855,444 - 46,253,842 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,856,403 - 45,991,102 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605020,360,871 - 20,753,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dtna
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247798,948,499 - 9,329,550 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247798,948,578 - 9,329,459 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005372772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005372790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013508451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013508483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013508554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013508773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013508872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01000590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01000592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01229810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000012771   ⟹   ENSCLAP00000012623
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540221,315,889 - 21,669,612 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012772   ⟹   ENSCLAP00000012624
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540221,413,807 - 21,669,612 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012773   ⟹   ENSCLAP00000012625
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540221,413,807 - 21,669,612 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012774   ⟹   ENSCLAP00000012626
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540221,505,847 - 21,673,044 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012775   ⟹   ENSCLAP00000012627
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540221,539,183 - 21,611,237 (+)Ensembl
RefSeq Acc Id: XM_005372772   ⟹   XP_005372829
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,123 - 21,676,389 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372773   ⟹   XP_005372830
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,123 - 21,673,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372775   ⟹   XP_005372832
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,123 - 21,673,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372778   ⟹   XP_005372835
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,676,389 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372779   ⟹   XP_005372836
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,673,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372780   ⟹   XP_005372837
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,673,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372782   ⟹   XP_005372839
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,673,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372783   ⟹   XP_005372840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,125 - 21,673,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372786   ⟹   XP_005372843
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,653,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372788   ⟹   XP_005372845
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,611,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005372790   ⟹   XP_005372847
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,126 - 21,611,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508451   ⟹   XP_013363905
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,123 - 21,676,389 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508483   ⟹   XP_013363937
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,122 - 21,673,044 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508554   ⟹   XP_013364008
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,676,389 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508773   ⟹   XP_013364227
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,126 - 21,653,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508872   ⟹   XP_013364326
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540221,414,124 - 21,673,044 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005372829   ⟸   XM_005372772
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005372830   ⟸   XM_005372773
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005372839   ⟸   XM_005372782
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005372832   ⟸   XM_005372775
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VAE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005372835   ⟸   XM_005372778
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005372836   ⟸   XM_005372779
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005372837   ⟸   XM_005372780
- Peptide Label: isoform X9
- UniProtKB: A0A8C2YNZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005372840   ⟸   XM_005372783
- Peptide Label: isoform X11
- UniProtKB: A0A8C2YNY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005372843   ⟸   XM_005372786
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_005372845   ⟸   XM_005372788
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_005372847   ⟸   XM_005372790
- Peptide Label: isoform X15
- UniProtKB: A0A8C2VAW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363937   ⟸   XM_013508483
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013363905   ⟸   XM_013508451
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013364008   ⟸   XM_013508554
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013364326   ⟸   XM_013508872
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_013364227   ⟸   XM_013508773
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: ENSCLAP00000012624   ⟸   ENSCLAT00000012772
RefSeq Acc Id: ENSCLAP00000012623   ⟸   ENSCLAT00000012771
RefSeq Acc Id: ENSCLAP00000012627   ⟸   ENSCLAT00000012775
RefSeq Acc Id: ENSCLAP00000012626   ⟸   ENSCLAT00000012774
RefSeq Acc Id: ENSCLAP00000012625   ⟸   ENSCLAT00000012773
Protein Domains
ZZ-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008729 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012771.1 UniProtKB/TrEMBL
  ENSCLAT00000012772 ENTREZGENE
  ENSCLAT00000012772.1 UniProtKB/TrEMBL
  ENSCLAT00000012773 ENTREZGENE
  ENSCLAT00000012773.1 UniProtKB/TrEMBL
  ENSCLAT00000012774 ENTREZGENE
  ENSCLAT00000012774.1 UniProtKB/TrEMBL
  ENSCLAT00000012775 ENTREZGENE
  ENSCLAT00000012775.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.90 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Distrobrevin UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF-hand_dom_typ1 UniProtKB/TrEMBL
  EF-hand_dom_typ2 UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/TrEMBL
NCBI Gene Dtna ENTREZGENE
PANTHER DYSTROBREVIN ALPHA UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE KCMF1 UniProtKB/TrEMBL
Pfam EF-hand_2 UniProtKB/TrEMBL
  EF-hand_3 UniProtKB/TrEMBL
  PF00569 UniProtKB/TrEMBL
PIRSF Distrobrevin UniProtKB/TrEMBL
PROSITE ZF_ZZ_1 UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/TrEMBL
SMART ZnF_ZZ UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A8C2VAE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VAW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YNY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YNZ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Dtna  dystrobrevin alpha    dystrobrevin, alpha  Symbol and/or name change 5135510 APPROVED