Ccdc116 (coiled-coil domain containing 116) - Rat Genome Database

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Gene: Ccdc116 (coiled-coil domain containing 116) Chinchilla lanigera
Analyze
Symbol: Ccdc116
Name: coiled-coil domain containing 116
RGD ID: 8714779
Description: ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 116
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544217,474,743 - 17,482,389 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccdc116
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544217,474,743 - 17,482,389 (-)NCBIChiLan1.0ChiLan1.0
CCDC116
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382221,632,760 - 21,637,329 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2221,632,716 - 21,637,329 (+)EnsemblGRCh38hg38GRCh38
GRCh372221,987,049 - 21,991,618 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362220,317,086 - 20,321,616 (+)NCBINCBI36Build 36hg18NCBI36
Celera225,804,626 - 5,809,156 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,944,961 - 4,949,491 (+)NCBIHuRef
CHM1_12221,987,284 - 21,991,814 (+)NCBICHM1_1
T2T-CHM13v2.02222,046,244 - 22,050,813 (+)NCBIT2T-CHM13v2.0
Ccdc116
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391616,956,928 - 16,965,459 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1616,956,928 - 16,965,093 (-)EnsemblGRCm39 Ensembl
GRCm381617,139,064 - 17,147,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,139,064 - 17,147,229 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,139,157 - 17,144,516 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,052,627 - 17,060,791 (-)NCBIMGSCv36mm8
Celera1617,711,862 - 17,717,221 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.62NCBI
Ccdc116
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,346,927 - 97,354,827 (+)NCBIGRCr8
mRatBN7.21183,842,707 - 83,850,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,845,557 - 83,850,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1192,575,734 - 92,578,816 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01185,236,877 - 85,239,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,290,456 - 84,293,538 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,092,794 - 88,100,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,095,170 - 88,098,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01191,147,583 - 91,150,783 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,849,737 - 85,852,819 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,890,333 - 85,893,416 (+)NCBI
Celera1182,607,768 - 82,610,850 (+)NCBICelera
Cytogenetic Map11q23NCBI
CCDC116
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22331,176,036 - 31,187,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,724,764 - 33,735,997 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,754,748 - 3,759,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12220,238,580 - 20,243,187 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2220,238,733 - 20,243,187 (+)Ensemblpanpan1.1panPan2
CCDC116
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,907,953 - 30,912,769 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,908,581 - 30,911,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,864,195 - 30,870,084 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02632,312,688 - 32,318,577 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12630,362,022 - 30,367,911 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,985,757 - 29,991,644 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02631,075,674 - 31,081,563 (+)NCBIUU_Cfam_GSD_1.0
Ccdc116
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,670,598 - 140,696,298 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366192,057,764 - 2,062,781 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC116
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11450,255,859 - 50,260,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,702,434 - 53,711,241 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC116
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,472,976 - 4,478,265 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,473,531 - 4,477,137 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660852,519,682 - 2,526,208 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc116
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247471,183,749 - 1,190,645 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_005391705   ⟹   XP_005391762
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544217,474,743 - 17,482,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391707   ⟹   XP_005391764
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544217,474,743 - 17,482,383 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391708   ⟹   XP_005391765
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544217,474,743 - 17,482,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518019   ⟹   XP_013373473
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544217,474,743 - 17,482,389 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391762 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391764 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391765 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373473 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005391762   ⟸   XM_005391705
- Sequence:
RefSeq Acc Id: XP_005391764   ⟸   XM_005391707
- Sequence:
RefSeq Acc Id: XP_005391765   ⟸   XM_005391708
- Sequence:
RefSeq Acc Id: XP_013373473   ⟸   XM_013518019
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000029167 ENTREZGENE
Ensembl Transcript ENSCLAT00000039229 ENTREZGENE
NCBI Gene Ccdc116 ENTREZGENE