Ecd (ecdysoneless cell cycle regulator)

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Gene: Ecd (ecdysoneless cell cycle regulator) Chinchilla lanigera

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Symbol:

Ecd

Name:

ecdysoneless cell cycle regulator

RGD ID:

8714296

Description:

ENCODES a protein that exhibits histone acetyltransferase binding (ortholog); INVOLVED IN fibroblast proliferation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of G1/S transition of mitotic cell cycle (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ecdysoneless homolog (Drosophila)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	18,539,584 - 18,566,810 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	18,537,726 - 18,566,870 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fibroblast proliferation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of G1/S transition of mitotic cell cycle (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

histone acetyltransferase binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ecd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	18,539,584 - 18,566,810 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	18,537,726 - 18,566,870 (+)	NCBI	ChiLan1.0	ChiLan1.0

ECD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	73,133,668 - 73,168,095 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	73,130,155 - 73,169,055 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	74,893,426 - 74,927,853 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	74,564,289 - 74,597,823 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	68,179,951 - 68,213,480 (-)	NCBI		Celera
Cytogenetic Map	10	q22.2	NCBI
HuRef	10	68,888,072 - 68,921,789 (-)	NCBI		HuRef
CHM1_1	10	75,176,030 - 75,209,601 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	74,005,060 - 74,039,488 (-)	NCBI		T2T-CHM13v2.0

Ecd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	20,369,927 - 20,398,189 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	20,369,920 - 20,398,189 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	20,319,859 - 20,348,121 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	20,319,852 - 20,348,121 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	21,139,081 - 21,167,343 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	19,108,691 - 19,136,636 (-)	NCBI		MGSCv36	mm8
Celera	14	16,700,588 - 16,728,939 (-)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	11.51	NCBI

Ecd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	4,016,411 - 4,047,899 (+)	NCBI		GRCr8
mRatBN7.2	15	3,967,209 - 3,998,713 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,967,382 - 3,998,706 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	4,399,829 - 4,431,268 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,400,991 - 4,431,277 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	8,500,863 - 8,531,884 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	15	597,942 - 628,367 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

ECD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	85,250,134 - 85,342,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	85,255,457 - 85,348,338 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	69,656,786 - 69,714,748 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	72,141,919 - 72,175,060 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	72,141,903 - 72,175,060 (-)	Ensembl	panpan1.1		panPan2

ECD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	23,708,734 - 23,742,331 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	23,709,024 - 23,742,312 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	23,844,765 - 23,880,513 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	23,992,562 - 24,028,791 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	23,995,145 - 24,028,810 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	23,891,808 - 23,927,242 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	24,090,997 - 24,126,913 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	24,445,679 - 24,481,942 (-)	NCBI		UU_Cfam_GSD_1.0

Ecd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	57,353,511 - 57,380,641 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	5,847,761 - 5,872,873 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	5,846,228 - 5,873,366 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ECD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	75,952,431 - 75,992,577 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	75,958,868 - 75,992,622 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	82,047,983 - 82,081,607 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ECD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	58,108,691 - 58,193,379 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	58,112,833 - 58,165,221 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	18,694,709 - 18,752,765 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ecd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	6,836,138 - 6,859,926 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	6,834,565 - 6,861,389 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005389989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01034800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01034801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01034802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01034803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01044847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000024696 ⟹ ENSCLAP00000024461

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955437	18,539,584 - 18,566,810 (+)	Ensembl

RefSeq Acc Id:

XM_005389989 ⟹ XP_005390046

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955437	18,537,726 - 18,566,870 (+)	NCBI

Sequence:

show sequence

CGGAACTTCCGCTGCTCGCAAGTTCCAGGGAGCGTCGGGAGCCAACCTGCTTCAGATTTTGGCG
GCTGATGGTATTTCCCGAGTCAAAGTGGAACAGGCGACCCAAGAAGAGTGCCCCGGCAGCGACG
CGCGGGAGAAGACCTAAAACTTTTTCAAAGAAGAATGGAGGAAAATATGATGCTTGCTACTGTG
GAAGACACTGTGGAGTACCACCTATTCCTGATACCAGATGAATCAAAGGACCCAGAAAAACGCA
GAGAGATTCTTGAGAAGTATATTGAGAGAATAATGACCCAGTTTGCACCTATGCTGGCTCCCTA
TATCTGGCAGAATCAACCTTTTAATCTCAAATATAAACCTGGCAAAGGAGGTGTTCCTGCTCAT
ATGTATGGTATGACAAAGTTTGGGGACAATATTGAAGATGAATGGTTTATTGTTTATTTAATAA
AACAGATTACAAAGGAATTTCCAGAGTTAGTAGCCAGGATTGAAGATAATGATGGTGAATTCTT
GTTAATAGAAGCTGCTGACTTTCTCCCTAAATGGTTAGATCCTGATAATAGTGCTAATAGGGTG
TTTTTCCATCACGGGGAGTTGTGCATTATTCCTGTACCAAGGAAATCTGAAACAGTATCCTGGT
TACCTGCTACTCCACCAACAATCCCACAAGCATTAACTATAATCTCTGCACACCCAGAAAAAGT
TTTGGTTTCAGAATCCATACGAGCTGCTGTCAGTAGGCGCATCAGAGGGTACCCAGAAAAAATT
CAGGCCTCGCTGCACCGAGCACACTGCTTCCTTCCAGCTGGCGTCGCAGTGGTACTAAAGCAGC
GGCCCAGATTGGTGGCTGCTGCCGTCCAGGCTTTTTACCTGCGGGACCCTGTTGACCTGCGAGC
CTGTCGGGTCTTCAAGACGTTCTTGCCAGAAACACAAATAATGACATCAGTTACTTTCACTAAA
TGTCTCTACGCACAGTTGGCACAACAGAGGTTTGTGCCCGACCGGCGGAGTGGATACGGGCTGC
CACCTCCCTCTCACCCCCAGTACCGAGCCCATGAACTGGGCATGAAGCTGGCTCATGGATTTGA
GATCTTATGCTCCAAATGTAGCCCACATTTTTTGAACACCAAGAAGTCCCTTGTGACTACTTCA
CCACTCTGGGCTAGCTTCCTTGAAAGTCTGAAAAAGAATGATTACTTTAAGGGACTCATAGAAG
GTTCTGCTCAATACCAGGAAAGGCTAGAAATGGCAAAGAACTACTTCCAACTCTCAGTAAACCG
GCCAGAAAGTTCACTTGCTATGAGCCCTGGTGAAGAAATCTTGACCATATTACAGACAGTACCA
TTTGATACAGAAGAGCTTAAGAAAGAAGAAGCTGACCTTCCCCCAGAGGACGATGACCAGTGGT
TAGAGCTTTCACCAGATCAGCTGGATCAGCTACTGCAAGAAGCTGCTGGCACAAAAGAATCACA
GCCCATTTCCAAGAAGGAAGAGGAGCAGAGCTATGACTTAACTCAAGTCACAGACAGCATGAAA
GCTTTCATATCCAAAGTCTCAACCCACAAGGGAGCAGAGCTGCCTCGAGACCCTTGTGAGGCTC
CAATCACTTTTGATACAGATTCCTTCCTTAATTATTTTGATAAAATTTTAGGGCCAAAGACACA
GGATTCAGACTCTGATGATCTGGATGAGGAAGACTTTGAATATTTAGACAGTGATGATGACATG
GACCTTGAGACTCAGGAACCTGGCGAAGAAGCTTCTCTGAAAGGAACTCTTGATAGTCTCAAGT
CATACATGGCCCAGATGGACCAGGAACTGGCACACACCAGCATTGGCAAAAGTTTTATGACTAG
GAAGCAAGTGAATAAGGAGCCTTCATCACAGACTAACAGTAACAATTCAGATGAGGAAGATTCT
GGGGCCAGAGATTCTGTTATGGCCCCAGTGGATGTCGACCTGAACCTAGTTTCAAATATATTGG
AATCCTACAGCTCCCAAGCTGGCCTGGCGGGGCCCGCCTCAAACCTCTTACAGAGCATGGGCGT
GCAGCTGCCTGACAACAGCGATCACAGAGCCGCAAGCAAGCCGGTGAAAGGTTAGCCCACACAT
CTAGCTTTGCTTTCCTCTTTAAATAAACAGTGAGTCCAAATGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005390046	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024461
	ENSCLAP00000024461.1

RefSeq Acc Id:

XP_005390046 ⟸ XM_005389989

- UniProtKB:

A0A8C2W334 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEENMMLATVEDTVEYHLFLIPDESKDPEKRREILEKYIERIMTQFAPMLAPYIWQNQPFNLKY
KPGKGGVPAHMYGMTKFGDNIEDEWFIVYLIKQITKEFPELVARIEDNDGEFLLIEAADFLPKW
LDPDNSANRVFFHHGELCIIPVPRKSETVSWLPATPPTIPQALTIISAHPEKVLVSESIRAAVS
RRIRGYPEKIQASLHRAHCFLPAGVAVVLKQRPRLVAAAVQAFYLRDPVDLRACRVFKTFLPET
QIMTSVTFTKCLYAQLAQQRFVPDRRSGYGLPPPSHPQYRAHELGMKLAHGFEILCSKCSPHFL
NTKKSLVTTSPLWASFLESLKKNDYFKGLIEGSAQYQERLEMAKNYFQLSVNRPESSLAMSPGE
EILTILQTVPFDTEELKKEEADLPPEDDDQWLELSPDQLDQLLQEAAGTKESQPISKKEEEQSY
DLTQVTDSMKAFISKVSTHKGAELPRDPCEAPITFDTDSFLNYFDKILGPKTQDSDSDDLDEED
FEYLDSDDDMDLETQEPGEEASLKGTLDSLKSYMAQMDQELAHTSIGKSFMTRKQVNKEPSSQT
NSNNSDEEDSGARDSVMAPVDVDLNLVSNILESYSSQAGLAGPASNLLQSMGVQLPDNSDHRAA
SKPVKG

hide sequence

Ensembl Acc Id:

ENSCLAP00000024461 ⟸ ENSCLAT00000024696

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016794	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024696	ENTREZGENE
	ENSCLAT00000024696.1	UniProtKB/TrEMBL
InterPro	Ecd	UniProtKB/TrEMBL
NCBI Gene	Ecd	ENTREZGENE
PANTHER	PROTEIN ECDYSONELESS HOMOLOG	UniProtKB/TrEMBL
	PTHR13060	UniProtKB/TrEMBL
Pfam	SGT1	UniProtKB/TrEMBL
UniProt	A0A8C2W334	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Ecd	ecdysoneless cell cycle regulator		ecdysoneless homolog (Drosophila)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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