Ncoa3 (nuclear receptor coactivator 3) - Rat Genome Database

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Gene: Ncoa3 (nuclear receptor coactivator 3) Chinchilla lanigera
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Symbol: Ncoa3
Name: nuclear receptor coactivator 3
RGD ID: 8714037
Description: ENCODES a protein that exhibits chromatin binding (ortholog); disordered domain specific binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell dedifferentiation (ortholog); cellular response to estradiol stimulus (ortholog); cerebellum development (ortholog); PARTICIPATES IN androgen signaling pathway; cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Bone Neoplasms (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544510,024,308 - 10,052,472 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544510,020,916 - 10,085,318 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ncoa3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544510,024,308 - 10,052,472 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544510,020,916 - 10,085,318 (-)NCBIChiLan1.0ChiLan1.0
NCOA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382047,501,887 - 47,656,872 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2047,501,887 - 47,656,877 (+)EnsemblGRCh38hg38GRCh38
GRCh372046,130,631 - 46,285,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362045,564,064 - 45,719,023 (+)NCBINCBI36Build 36hg18NCBI36
Build 342045,564,063 - 45,719,019NCBI
Celera2042,844,227 - 42,999,274 (+)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2042,872,332 - 43,026,949 (+)NCBIHuRef
CHM1_12046,033,477 - 46,188,916 (+)NCBICHM1_1
T2T-CHM13v2.02049,240,095 - 49,395,274 (+)NCBIT2T-CHM13v2.0
Ncoa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,834,557 - 165,915,162 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2165,834,556 - 165,915,162 (+)EnsemblGRCm39 Ensembl
GRCm382165,992,637 - 166,073,242 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,992,636 - 166,073,242 (+)EnsemblGRCm38mm10GRCm38
MGSCv372165,818,137 - 165,898,742 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362165,726,090 - 165,761,651 (+)NCBIMGSCv36mm8
Celera2171,928,977 - 172,011,677 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map286.22NCBI
Ncoa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83175,157,824 - 175,237,831 (+)NCBIGRCr8
mRatBN7.23154,738,566 - 154,821,395 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3154,738,581 - 154,818,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3158,538,937 - 158,619,397 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03167,037,941 - 167,118,397 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03164,779,584 - 164,860,043 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03162,692,176 - 162,788,582 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3162,692,185 - 162,787,548 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03168,863,837 - 168,959,427 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43157,168,492 - 157,196,566 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13157,079,533 - 157,100,362 (+)NCBI
Celera3153,323,587 - 153,406,335 (+)NCBICelera
Cytogenetic Map3q42NCBI
NCOA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22153,240,803 - 53,395,781 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12053,233,900 - 53,388,887 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02043,838,227 - 43,992,407 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12044,919,348 - 45,073,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2045,000,422 - 45,073,549 (+)Ensemblpanpan1.1panPan2
NCOA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2434,585,305 - 34,728,674 (+)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2434,585,305 - 34,728,674 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2434,044,925 - 34,190,239 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02435,293,645 - 35,438,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2435,293,662 - 35,438,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12434,528,192 - 34,678,477 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02434,667,908 - 34,813,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02435,208,068 - 35,353,609 (+)NCBIUU_Cfam_GSD_1.0
Ncoa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640190,446,492 - 190,514,236 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365145,901,601 - 5,967,865 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365145,900,135 - 5,967,862 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1749,528,179 - 49,663,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11749,528,275 - 49,660,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21755,850,658 - 55,874,660 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCOA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1216,270,218 - 16,423,381 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl216,273,717 - 16,423,318 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605064,808,267 - 64,961,547 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncoa3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247907,232,519 - 7,358,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247907,229,152 - 7,358,627 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000012378   ⟹   ENSCLAP00000012236
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544510,024,308 - 10,052,472 (-)Ensembl
RefSeq Acc Id: XM_005392342   ⟹   XP_005392399
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544510,020,916 - 10,085,318 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392399 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012236
  ENSCLAP00000012236.1
RefSeq Acc Id: XP_005392399   ⟸   XM_005392342
- UniProtKB: A0A8C2VEN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012236   ⟸   ENSCLAT00000012378
Protein Domains
bHLH   PAS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008442 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012378 ENTREZGENE
  ENSCLAT00000012378.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
  6.10.140.410 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  DUF4927 UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  NCO_DUF1518 UniProtKB/TrEMBL
  Nuc_rcpt_coact UniProtKB/TrEMBL
  Nuc_rcpt_coact_Ncoa-typ UniProtKB/TrEMBL
  Nuc_rcpt_coact_Ncoa_int_sf UniProtKB/TrEMBL
  Nuclear_rcpt_coactivator UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  PAS_fold UniProtKB/TrEMBL
  SRC/p160_LXXLL UniProtKB/TrEMBL
NCBI Gene Ncoa3 ENTREZGENE
PANTHER PTHR10684 UniProtKB/TrEMBL
  PTHR10684:SF3 UniProtKB/TrEMBL
Pfam DUF1518 UniProtKB/TrEMBL
  DUF4927 UniProtKB/TrEMBL
  NCOA_u2 UniProtKB/TrEMBL
  Nuc_rec_co-act UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS_11 UniProtKB/TrEMBL
  SRC-1 UniProtKB/TrEMBL
PIRSF Nuclear_receptor_coactivator UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
SMART DUF1518 UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
  SSF55785 UniProtKB/TrEMBL
  SSF69125 UniProtKB/TrEMBL
UniProt A0A8C2VEN1 ENTREZGENE, UniProtKB/TrEMBL