Nt5dc1 (5'-nucleotidase domain containing 1) - Rat Genome Database

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Gene: Nt5dc1 (5'-nucleotidase domain containing 1) Chinchilla lanigera
Analyze
Symbol: Nt5dc1
Name: 5'-nucleotidase domain containing 1
RGD ID: 8713765
Description: ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 5'-nucleotidase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955526568,307 - 604,941 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nt5dc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955526568,307 - 604,941 (-)NCBIChiLan1.0ChiLan1.0
NT5DC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,100,853 - 116,249,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,100,851 - 116,249,497 (+)EnsemblGRCh38hg38GRCh38
GRCh376116,422,016 - 116,570,660 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,528,692 - 116,673,546 (+)NCBINCBI36Build 36hg18NCBI36
Build 346116,528,691 - 116,673,545NCBI
Celera6117,165,022 - 117,309,890 (+)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,002,198 - 114,147,046 (+)NCBIHuRef
CHM1_16116,685,819 - 116,830,746 (+)NCBICHM1_1
T2T-CHM13v2.06117,284,838 - 117,433,477 (+)NCBIT2T-CHM13v2.0
Nt5dc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391034,179,605 - 34,294,585 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1034,164,284 - 34,294,548 (-)EnsemblGRCm39 Ensembl
GRCm381034,303,609 - 34,418,589 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1034,288,288 - 34,418,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv371034,023,418 - 34,138,334 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361033,993,225 - 34,107,944 (-)NCBIMGSCv36mm8
Celera1035,213,268 - 35,327,093 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1018.85NCBI
Nt5dc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82039,660,707 - 39,763,647 (-)NCBIGRCr8
mRatBN7.22038,105,677 - 38,208,613 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2038,105,678 - 38,208,591 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2039,822,723 - 39,925,595 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02039,481,840 - 39,584,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02040,201,663 - 40,304,596 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02041,106,990 - 41,209,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2041,106,991 - 41,209,728 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02042,836,806 - 42,938,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42038,646,201 - 38,750,613 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12038,670,228 - 38,776,528 (-)NCBI
Celera2038,888,068 - 38,989,368 (-)NCBICelera
Cytogenetic Map20q12NCBI
NT5DC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25136,109,009 - 136,253,828 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16134,001,995 - 134,146,804 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06113,903,473 - 114,051,784 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16118,049,363 - 118,194,017 (+)NCBIpanpan1.1PanPan1.1panPan2
NT5DC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,790,973 - 71,909,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,791,748 - 71,907,498 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1271,550,833 - 71,670,015 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01272,672,270 - 72,791,171 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1272,672,277 - 72,791,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,024,246 - 72,143,173 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01271,866,027 - 71,984,731 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,254,898 - 72,373,702 (+)NCBIUU_Cfam_GSD_1.0
LOC101970611
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946107,080,662 - 107,116,124 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936824723,160 - 839,436 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936824805,647 - 841,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NT5DC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl181,746,022 - 81,881,113 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1181,745,918 - 81,880,691 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2191,861,465 - 91,997,370 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NT5DC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11357,568,061 - 57,715,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1357,569,744 - 57,715,604 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604029,889,313 - 30,038,021 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nt5dc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248562,246,730 - 2,389,020 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013507352   ⟹   XP_013362806
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955526568,307 - 604,941 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362806 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013362806   ⟸   XM_013507352
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Nt5dc1 ENTREZGENE